Os08g0439200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os08g0439200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.39 | 0.28 | 10.5 | -1.01 | 0.493 | 1.04 | 0.0388 | -1.71 | -0.11 | 21.3 | 8.956 | 744 | -- | -- |
| 37.1 | 0.284 | 10.5 | -0.966 | 0.686 | 1.35 | 1.14 | -- | -0.0921 | 18.5 | 4.58 | 639 | -- | -- |
| 35.31 | 0.277 | 10.5 | -1 | 0.516 | 1.07 | -- | -1.58 | -0.0928 | 21.3 | 8.755 | 767 | -- | -- |
| 39.02 | 0.291 | 10.5 | -1.03 | 0.675 | 1.04 | -- | -- | -0.0945 | 22.9 | 9.465 | 924 | -- | -- |
| 41.36 | 0.3 | 10.4 | -0.934 | -- | 0.787 | -- | -1.08 | -0.0428 | -- | 8.477 | 527 | -- | -- |
| 41 | 0.3 | 10.5 | -1.08 | 0.604 | -- | -0.831 | -- | -0.172 | 3.65 | -- | -- | -- | -- |
| 42.92 | 0.307 | 10.5 | -1.06 | 0.597 | -- | -- | -- | -0.167 | 3.3 | -- | -- | -- | -- |
| 41.54 | 0.3 | 10.5 | -1.03 | -- | 0.963 | -- | -- | -0.0196 | -- | 6.346 | 1859 | -- | -- |
| 65.17 | 0.376 | 10.4 | -- | 0.641 | 0.935 | -- | -- | 0.0563 | 23.4 | 17.88 | 956 | -- | -- |
| 63.06 | 0.371 | 10.5 | -1.04 | -- | -- | -- | -- | -0.151 | -- | -- | -- | -- | -- |
| 72.67 | 0.399 | 10.4 | -- | 0.576 | -- | -- | -- | -0.0482 | 3.3 | -- | -- | -- | -- |
| 66.11 | 0.379 | 10.4 | -- | -- | 1.07 | -- | -- | 0.0547 | -- | 3.503 | 1828 | -- | -- |
| 91.44 | 0.446 | 10.4 | -- | -- | -- | -- | -- | -0.0357 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.01 | radiation | 10.0 | 720 | < th | dose dependent | sin | 20 | NA |
| 2 | 35.02 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 3 | 35.04 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 4 | 35.06 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 8 | 35.10 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 18 | 35.19 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 19 | 35.20 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 25 | 35.26 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 42 | 35.37 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 43 | 35.38 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 22 | 2 |
| 46 | 35.39 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 13 | 19 |
| 47 | 35.39 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 11 | 21 |
| 48 | 35.39 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 50 | 35.41 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 9 |
| 81 | 35.50 | radiation | 10.0 | 720 | < th | dose independent | rect. | 14 | 9 |
| 100 | 35.56 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 114 | 35.59 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 122 | 35.60 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 125 | 35.61 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 126 | 35.62 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 19 | 8 |
| 137 | 35.65 | radiation | 10.0 | 720 | < th | dose dependent | no | NA | NA |
| 142 | 35.68 | humidity | 90.0 | 270 | < th | dose independent | rect. | 20 | 5 |
| 154 | 35.71 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 17 |
| 165 | 35.75 | radiation | 10.0 | 720 | < th | dose independent | rect. | 14 | 16 |
| 170 | 35.76 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 184 | 35.80 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 8 |
| 187 | 35.80 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 194 | 35.82 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 12 |
| 209 | 35.85 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 215 | 35.86 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 231 | 35.88 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 233 | 35.89 | radiation | 10.0 | 720 | < th | dose independent | sin | 18 | NA |
| 247 | 35.91 | radiation | 10.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 267 | 35.95 | wind | 1.0 | 30 | > th | dose independent | rect. | 10 | 15 |
| 269 | 35.95 | humidity | 90.0 | 90 | < th | dose independent | rect. | 23 | 17 |
| 271 | 35.95 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 288 | 35.97 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 303 | 36.01 | radiation | 20.0 | 30 | < th | dose independent | rect. | 3 | 9 |
| 319 | 36.03 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 321 | 36.04 | wind | 1.0 | 270 | > th | dose independent | rect. | 23 | 1 |
| 323 | 36.04 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 12 |
| 327 | 36.05 | wind | 1.0 | 90 | > th | dose independent | rect. | 10 | 17 |
| 328 | 36.05 | radiation | 10.0 | 720 | < th | dose independent | rect. | 11 | 18 |
| 340 | 36.08 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 342 | 36.08 | radiation | 10.0 | 720 | < th | dose independent | rect. | 11 | 12 |
| 348 | 36.08 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 350 | 36.09 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 359 | 36.09 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 20 |
| 362 | 36.10 | humidity | 70.0 | 720 | > th | dose independent | rect. | 14 | 15 |
| 364 | 36.10 | radiation | 10.0 | 720 | < th | dose independent | rect. | 9 | 19 |
| 377 | 36.11 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 16 |
| 378 | 36.11 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 16 |
| 381 | 36.12 | radiation | 40.0 | 270 | < th | dose independent | rect. | 24 | 8 |
| 383 | 36.12 | radiation | 10.0 | 720 | < th | dose independent | rect. | 9 | 14 |
| 395 | 36.14 | radiation | 10.0 | 720 | < th | dose independent | sin | 14 | NA |
| 397 | 36.14 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 9 |
| 402 | 36.15 | humidity | 70.0 | 720 | > th | dose independent | sin | 15 | NA |
| 412 | 36.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 8 |
| 415 | 36.16 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 8 |
| 417 | 36.16 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 8 |
| 418 | 36.16 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 8 |
| 421 | 36.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 16 |
| 422 | 36.16 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 426 | 36.17 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 8 |
| 435 | 36.18 | humidity | 70.0 | 720 | < th | dose independent | rect. | 15 | 5 |
| 461 | 36.19 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 463 | 36.19 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 23 | 14 |
| 467 | 36.19 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 491 | 36.21 | temperature | 25.0 | 90 | > th | dose independent | rect. | 23 | 17 |
| 493 | 36.21 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 501 | 36.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 8 |
| 502 | 36.22 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 16 |
| 504 | 36.22 | radiation | 20.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 507 | 36.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 8 |
| 537 | 36.24 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 541 | 36.25 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 547 | 36.25 | radiation | 40.0 | 10 | < th | dose independent | rect. | 3 | 20 |
| 572 | 36.27 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 10 | 15 |
| 587 | 36.29 | wind | 1.0 | 90 | > th | dose independent | rect. | 22 | 5 |
| 614 | 36.30 | temperature | 25.0 | 90 | > th | dose independent | rect. | 23 | 15 |
| 615 | 36.30 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 16 |
| 631 | 36.31 | humidity | 60.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 637 | 36.31 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 654 | 36.32 | radiation | 10.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 673 | 36.33 | temperature | 30.0 | 10 | < th | dose independent | rect. | 3 | 7 |
| 681 | 36.34 | radiation | 10.0 | 270 | > th | dose independent | sin | 4 | NA |
| 687 | 36.34 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 22 | 5 |
| 691 | 36.34 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 696 | 36.35 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 7 |
| 704 | 36.35 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 7 |
| 712 | 36.35 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 11 | 17 |
| 717 | 36.35 | radiation | 1.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 732 | 36.36 | wind | 9.0 | 30 | < th | dose independent | rect. | 10 | 17 |
| 771 | 36.38 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 6 | 13 |
| 795 | 36.39 | radiation | 10.0 | 270 | > th | dose independent | rect. | 17 | 21 |
| 796 | 36.39 | radiation | 1.0 | 10 | > th | dose dependent | sin | 1 | NA |
| 801 | 36.39 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 16 | 22 |
| 803 | 36.39 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 816 | 36.40 | radiation | 20.0 | 10 | < th | dose dependent | no | NA | NA |
| 826 | 36.40 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 834 | 36.41 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 10 | 17 |
| 843 | 36.41 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 857 | 36.42 | wind | 9.0 | 90 | < th | dose independent | rect. | 10 | 15 |
| 864 | 36.42 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 24 | 7 |
| 867 | 36.42 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 15 | 15 |
| 873 | 36.42 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 874 | 36.42 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 902 | 36.44 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 913 | 36.44 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 934 | 36.45 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 20 |
| 937 | 36.45 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 947 | 36.46 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 950 | 36.46 | radiation | 1.0 | 10 | > th | dose dependent | no | NA | NA |
| 951 | 36.46 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 23 | 5 |