Os08g0437300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0437300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.48 | 0.535 | 10.8 | -0.0784 | 1.46 | 2.57 | 0.159 | 1.72 | -0.27 | 9.29 | 24.2 | 1367 | -- | -- |
| 132.02 | 0.535 | 10.7 | 0.201 | 1.5 | 2.35 | 0.071 | -- | -0.206 | 9.47 | 25 | 1501 | -- | -- |
| 129.56 | 0.53 | 10.8 | -0.0778 | 1.46 | 2.58 | -- | 1.76 | -0.271 | 9.3 | 24.15 | 1367 | -- | -- |
| 132 | 0.535 | 10.7 | 0.213 | 1.49 | 2.34 | -- | -- | -0.196 | 9.41 | 25 | 1499 | -- | -- |
| 228.97 | 0.705 | 10.8 | 0.0275 | -- | 2.45 | -- | 1.35 | -0.0963 | -- | 26.15 | 2250 | -- | -- |
| 204.01 | 0.67 | 10.9 | -0.501 | 1.48 | -- | 0.219 | -- | -0.681 | 9.55 | -- | -- | -- | -- |
| 204.19 | 0.669 | 10.9 | -0.493 | 1.48 | -- | -- | -- | -0.681 | 9.56 | -- | -- | -- | -- |
| 194.31 | 0.649 | 10.8 | 0.299 | -- | 2.9 | -- | -- | -0.106 | -- | 29.8 | 749 | -- | -- |
| 132.89 | 0.537 | 10.8 | -- | 1.45 | 2.22 | -- | -- | -0.237 | 9.25 | 25 | 1336 | -- | -- |
| 333.36 | 0.853 | 10.9 | -0.504 | -- | -- | -- | -- | -0.677 | -- | -- | -- | -- | -- |
| 210.6 | 0.679 | 10.8 | -- | 1.48 | -- | -- | -- | -0.626 | 9.59 | -- | -- | -- | -- |
| 196.28 | 0.653 | 10.8 | -- | -- | 2.79 | -- | -- | -0.167 | -- | 30.07 | 746 | -- | -- |
| 340.06 | 0.861 | 10.9 | -- | -- | -- | -- | -- | -0.621 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.66 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 3 | 125.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 12 |
| 19 | 125.90 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 22 | 125.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 26 | 126.07 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 53 | 126.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 71 | 127.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 80 | 127.54 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 82 | 127.55 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 96 | 127.87 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 10 |
| 97 | 127.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 126 | 128.19 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 131 | 128.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 12 |
| 154 | 128.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 159 | 128.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 175 | 128.57 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 177 | 128.58 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 15 |
| 323 | 129.78 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 359 | 130.01 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 365 | 130.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 383 | 130.22 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 393 | 130.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 463 | 130.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 554 | 131.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 832 | 132.73 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 8 |