Os08g0436800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L34.
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Os08g0436800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L34.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.83 | 0.338 | 13.3 | -0.128 | 0.928 | 0.531 | 0.47 | -1.28 | -0.16 | 18.5 | 20.5 | 2845 | -- | -- |
| 54.16 | 0.343 | 13.3 | 0.093 | 0.909 | 0.841 | 0.461 | -- | -0.103 | 18.3 | 19.63 | 2773 | -- | -- |
| 52.37 | 0.337 | 13.3 | -0.138 | 0.927 | 0.536 | -- | -1.29 | -0.16 | 18.5 | 20.5 | 2827 | -- | -- |
| 54.76 | 0.345 | 13.3 | 0.0773 | 0.933 | 0.82 | -- | -- | -0.0984 | 18.4 | 19.6 | 2777 | -- | -- |
| 96.58 | 0.458 | 13.3 | -0.185 | -- | 0.509 | -- | -1.33 | -0.203 | -- | 20.81 | 3644 | -- | -- |
| 65.75 | 0.38 | 13.2 | 0.515 | 0.907 | -- | 0.628 | -- | 0.092 | 18.6 | -- | -- | -- | -- |
| 66.74 | 0.383 | 13.2 | 0.505 | 0.91 | -- | -- | -- | 0.0939 | 18.5 | -- | -- | -- | -- |
| 98.02 | 0.461 | 13.2 | 0.127 | -- | 0.789 | -- | -- | -0.0975 | -- | 19.6 | 2053 | -- | -- |
| 54.92 | 0.345 | 13.3 | -- | 0.919 | 0.833 | -- | -- | -0.101 | 18.4 | 19.6 | 2777 | -- | -- |
| 109.83 | 0.49 | 13.2 | 0.483 | -- | -- | -- | -- | 0.0752 | -- | -- | -- | -- | -- |
| 73.47 | 0.401 | 13.2 | -- | 0.903 | -- | -- | -- | 0.0376 | 18.6 | -- | -- | -- | -- |
| 98.35 | 0.462 | 13.2 | -- | -- | 0.816 | -- | -- | -0.11 | -- | 19.7 | 2107 | -- | -- |
| 115.99 | 0.503 | 13.2 | -- | -- | -- | -- | -- | 0.0216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.38 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 14 | 50.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 22 | 51.23 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 30 | 51.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 31 | 51.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 32 | 51.33 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 35 | 51.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 53 | 51.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 92 | 51.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 94 | 51.70 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 107 | 51.74 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 112 | 51.75 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 122 | 51.81 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 211 | 52.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 225 | 52.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 251 | 52.28 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 286 | 52.39 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 337 | 52.51 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 354 | 52.55 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 387 | 52.64 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 435 | 52.73 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 545 | 52.91 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 600 | 52.98 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 612 | 52.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 630 | 53.02 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 645 | 53.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 661 | 53.06 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 670 | 53.06 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 683 | 53.07 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 690 | 53.08 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 700 | 53.10 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 726 | 53.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 750 | 53.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 23 |
| 755 | 53.15 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 773 | 53.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 970 | 53.39 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 990 | 53.41 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 15 |
| 993 | 53.42 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 2 |