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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0436700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NAC transcription factor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.83 (0.058) R2 : 0.724
β1 : -0.573 (0.213) R2dD : 0.00473 R2D : 0.00849
β2 : 4.19 (0.143) R2dC : 0.568 R2C : 0.341
β3 : -3.59 (0.166) R2dE : 0.311 R2E : 0.0937
β4 : -4.13 (0.523) R2dD*C : 0.0397 R2D*C : 0.0456
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.498 (0.125) R2dN8 : 0.0133 R2N8 : 0.0217
σ : 1.08
deviance : 538.7
__
_____
C
peak time of C : 12.4
E
wheather : temperature
threshold : 7.562
memory length : 279
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.58
open length of G : 7.27

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
536.17 1.09 5.85 -0.684 4.19 -3.5 -3.91 -1.32 -0.542 12.4 7.647 275 1.6 7.31
538.7 1.08 5.83 -0.573 4.19 -3.59 -4.13 -- -0.498 12.4 7.562 279 1.58 7.27
594.25 1.14 5.81 -0.78 4.36 -3.8 -- -3.28 -0.411 12.3 8.305 293 1.63 7.33
615.3 1.16 5.84 -0.683 4.25 -3.6 -- -- -0.483 12.4 8.063 282 1.55 7.37
1243.07 1.65 5.99 -0.94 -- -2.72 -- -0.0657 -0.828 -- -66.97 1580 1.48 7.22
694.55 1.24 5.99 -0.867 4.44 -- -3.45 -- -0.806 14.9 -- -- -- --
733.58 1.27 6 -0.945 4.44 -- -- -- -0.825 15 -- -- -- --
1200.48 1.61 5.85 -0.197 -- -3.71 -- -- -0.129 -- -58.3 1597 0.0166 7.48
629.39 1.17 5.84 -- 4.27 -3.64 -- -- -0.463 12.3 8.135 284 1.53 7.35
1862.71 2.02 6.01 -1.13 -- -- -- -- -0.941 -- -- -- -- --
757.12 1.29 5.98 -- 4.46 -- -- -- -0.72 15 -- -- -- --
1191.8 1.61 5.88 -- -- -3.57 -- -- -0.333 -- -94.94 1600 0.00215 7.48
1896.65 2.03 5.99 -- -- -- -- -- -0.815 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 540.66 temperature 10.0 270 > th dose dependent rect. 2 7
2 542.17 temperature 10.0 270 > th dose dependent rect. 19 8
5 549.25 radiation 30.0 30 < th dose independent rect. 16 17
6 549.31 radiation 40.0 90 < th dose independent rect. 3 6
9 550.22 humidity 60.0 90 > th dose independent rect. 3 6
15 551.21 wind 9.0 90 < th dose independent rect. 3 6
16 551.21 temperature 10.0 90 > th dose independent rect. 3 6
19 551.21 atmosphere 995.0 90 > th dose independent rect. 3 6
20 551.21 atmosphere 1015.0 90 < th dose independent rect. 3 6
21 551.21 temperature 10.0 90 > th dose independent rect. 9 18
24 551.49 precipitation 0.1 90 < th dose independent rect. 3 6
25 551.49 precipitation 0.1 90 < th dose dependent rect. 3 6
30 552.69 humidity 50.0 270 > th dose dependent rect. 2 6
31 552.95 precipitation 0.1 270 < th dose independent rect. 1 8
32 552.95 precipitation 0.1 270 < th dose dependent rect. 1 8
33 553.09 radiation 40.0 270 < th dose independent rect. 15 15
35 553.31 wind 9.0 90 < th dose independent rect. 9 18
36 553.39 radiation 40.0 270 < th dose independent rect. 1 8
38 553.48 temperature 10.0 270 > th dose independent rect. 6 9
39 553.48 atmosphere 1015.0 270 < th dose independent rect. 6 9
40 553.48 temperature 10.0 270 > th dose independent rect. 15 15
43 553.80 temperature 30.0 270 < th dose independent rect. 7 8
44 553.86 temperature 10.0 270 > th dose independent rect. 1 8
46 553.86 humidity 50.0 270 > th dose independent rect. 1 8
47 553.86 atmosphere 995.0 270 > th dose independent rect. 1 8
48 553.86 atmosphere 1015.0 270 < th dose independent rect. 1 8
49 553.86 temperature 10.0 270 > th dose independent rect. 9 16
50 553.88 wind 9.0 270 < th dose independent rect. 1 8
52 554.03 precipitation 0.1 270 < th dose independent rect. 6 9
53 554.03 precipitation 0.1 270 < th dose dependent rect. 6 9
58 554.42 wind 9.0 270 < th dose independent rect. 15 15
64 554.61 temperature 30.0 270 < th dose independent rect. 2 6
73 554.75 wind 1.0 270 > th dose independent rect. 6 9
75 555.02 atmosphere 995.0 270 > th dose independent rect. 6 9
76 555.13 radiation 40.0 90 < th dose independent rect. 9 18
81 555.36 precipitation 0.1 270 < th dose independent rect. 15 15
82 555.36 precipitation 0.1 270 < th dose dependent rect. 15 15
87 555.69 humidity 50.0 270 > th dose independent rect. 7 8
89 555.85 wind 9.0 270 < th dose independent rect. 9 16
92 556.14 radiation 40.0 10 < th dose dependent rect. 16 17
94 556.28 humidity 60.0 270 > th dose dependent rect. 3 4
111 557.13 wind 9.0 270 < th dose independent rect. 6 9
117 557.44 atmosphere 1015.0 90 < th dose independent rect. 9 18
129 558.04 precipitation 0.1 270 < th dose independent rect. 9 16
130 558.04 precipitation 0.1 270 < th dose dependent rect. 9 16
141 558.92 humidity 80.0 270 > th dose independent rect. 3 4
143 558.93 precipitation 0.1 90 < th dose independent rect. 9 18
144 558.93 precipitation 0.1 90 < th dose dependent rect. 9 18
163 559.65 wind 9.0 90 < th dose dependent rect. 3 6
167 559.85 atmosphere 995.0 270 > th dose independent rect. 15 16
247 562.42 temperature 15.0 30 > th dose independent rect. 11 16
256 562.94 radiation 40.0 270 < th dose dependent rect. 2 6
264 563.18 radiation 40.0 270 < th dose dependent rect. 3 4
271 563.36 wind 9.0 270 < th dose dependent rect. 3 4
273 563.67 temperature 15.0 270 > th dose independent rect. 19 8
276 563.74 atmosphere 995.0 10 > th dose independent rect. 16 17
277 563.76 wind 9.0 30 < th dose independent rect. 16 17
283 563.95 humidity 60.0 30 > th dose independent rect. 3 8
285 564.11 precipitation 0.1 270 < th dose independent rect. 3 16
286 564.11 precipitation 0.1 270 < th dose dependent rect. 3 16
289 564.24 precipitation 0.1 30 < th dose independent rect. 3 8
290 564.24 precipitation 0.1 30 < th dose dependent rect. 3 8
296 564.49 temperature 10.0 30 > th dose independent rect. 3 8
299 564.49 atmosphere 995.0 30 > th dose independent rect. 3 8
300 564.49 atmosphere 1015.0 30 < th dose independent rect. 3 8
303 564.53 temperature 10.0 10 > th dose independent rect. 9 7
305 564.53 atmosphere 1015.0 10 < th dose independent rect. 9 7
306 564.53 precipitation 0.1 10 < th dose independent rect. 9 7
307 564.53 temperature 10.0 10 > th dose independent rect. 16 17
308 564.53 precipitation 0.1 10 < th dose dependent rect. 9 7
322 564.82 wind 9.0 30 < th dose independent rect. 3 8
325 564.84 radiation 1.0 270 < th dose dependent rect. 18 9
331 565.25 radiation 40.0 90 < th dose independent rect. 11 16
353 565.58 precipitation 0.1 30 < th dose independent rect. 16 17
354 565.58 precipitation 0.1 30 < th dose dependent rect. 16 17
356 565.72 radiation 30.0 30 < th dose independent rect. 3 8
357 565.75 atmosphere 995.0 10 > th dose independent rect. 9 7
370 566.08 precipitation 0.1 10 < th dose independent rect. 11 16
371 566.08 precipitation 0.1 10 < th dose dependent rect. 11 16
377 566.31 humidity 50.0 30 > th dose independent rect. 9 7
378 566.32 temperature 30.0 90 < th dose independent rect. 9 7
382 566.57 atmosphere 995.0 270 > th dose independent rect. 18 9
385 566.59 temperature 10.0 30 > th dose dependent rect. 3 8
394 566.78 wind 9.0 90 < th dose independent rect. 11 16
395 566.79 temperature 15.0 270 > th dose independent rect. 3 16
425 567.28 humidity 60.0 270 > th dose independent rect. 19 8
427 567.32 radiation 1.0 270 < th dose independent rect. 18 9
432 567.38 temperature 30.0 270 < th dose independent rect. 19 8
441 567.38 atmosphere 1015.0 270 < th dose independent rect. 3 16
450 567.50 wind 9.0 270 < th dose independent rect. 19 8
468 567.74 wind 1.0 30 > th dose independent rect. 9 7
479 568.05 atmosphere 1015.0 30 < th dose independent rect. 11 16
482 568.12 humidity 50.0 10 > th dose independent rect. 16 17
491 568.49 atmosphere 995.0 90 > th dose independent rect. 9 18
501 568.71 wind 9.0 270 < th dose independent rect. 3 16
528 569.27 temperature 10.0 1440 > th dose independent rect. 10 7
531 569.27 temperature 10.0 1440 > th dose independent rect. 17 17
542 569.56 atmosphere 1015.0 90 < th dose dependent rect. 3 6
557 569.96 atmosphere 995.0 270 > th dose independent rect. 9 16
567 570.13 wind 1.0 270 > th dose independent rect. 14 16
570 570.26 wind 1.0 270 > th dose independent rect. 9 16
585 570.67 wind 9.0 30 < th dose independent rect. 9 7
595 571.14 precipitation 0.1 270 < th dose independent rect. 19 8
596 571.14 precipitation 0.1 270 < th dose dependent rect. 19 8
619 571.49 temperature 25.0 720 < th dose independent rect. 6 2
630 571.59 radiation 1.0 270 > th dose independent rect. 7 8
635 571.74 temperature 30.0 270 < th dose independent rect. 21 16
684 573.62 temperature 25.0 720 < th dose independent rect. 5 4
689 573.80 radiation 1.0 30 > th dose independent rect. 9 7
693 573.82 wind 1.0 10 > th dose independent rect. 16 17
735 574.96 wind 9.0 90 < th dose dependent rect. 11 16
757 575.48 atmosphere 995.0 270 > th dose independent rect. 3 15
764 575.74 humidity 50.0 270 > th dose independent rect. 8 18
770 575.97 humidity 50.0 270 > th dose independent rect. 9 16
774 576.05 atmosphere 1015.0 270 < th dose dependent rect. 3 3
842 577.02 atmosphere 995.0 30 > th dose independent rect. 11 16
883 577.57 wind 1.0 270 > th dose independent rect. 13 9
936 578.41 temperature 10.0 270 > th dose independent rect. 13 9
937 578.41 temperature 10.0 270 > th dose independent rect. 22 15
938 578.41 atmosphere 995.0 270 > th dose independent rect. 22 15
939 578.41 precipitation 0.1 270 < th dose independent rect. 22 15
940 578.41 precipitation 0.1 270 < th dose dependent rect. 22 15
946 578.84 humidity 50.0 270 > th dose independent rect. 22 15
952 578.95 radiation 1.0 270 < th dose dependent rect. 6 21
955 579.00 precipitation 0.1 270 < th dose independent rect. 13 9
956 579.00 precipitation 0.1 270 < th dose dependent rect. 13 9
958 579.04 temperature 10.0 1440 > th dose independent rect. 4 6
961 579.04 atmosphere 995.0 1440 > th dose independent rect. 4 6
962 579.04 atmosphere 1015.0 1440 < th dose independent rect. 4 6
963 579.04 temperature 10.0 1440 > th dose independent rect. 10 18
972 579.16 temperature 10.0 1440 > th dose independent rect. 4 8
975 579.16 atmosphere 995.0 1440 > th dose independent rect. 4 8
976 579.16 temperature 10.0 1440 > th dose independent rect. 12 16
982 579.23 temperature 30.0 30 < th dose independent rect. 3 8