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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0435800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Lipoate protein ligase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0418) R2 : 0.00344
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.11 (0.088) R2dN8 : 0.00445 R2N8 : 0.00344
σ : 0.787
deviance : 284.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
261.79 0.76 3.05 0.218 0.447 -0.629 0.405 2.07 -0.0618 17.4 1.13 2 -- --
267.32 0.761 3.03 0.33 0.431 -0.497 0.738 -- -0.0454 17.2 1.191 2 -- --
262.18 0.754 3.05 0.218 0.447 -0.627 -- 2.18 -0.0618 17.4 1.13 2 -- --
268.62 0.763 3.03 0.331 0.431 -0.478 -- -- -0.0431 17.5 1.194 2 -- --
271.11 0.767 3.05 0.227 -- -0.43 -- 2.08 -0.0776 -- 1.199 2 -- --
275.73 0.778 3.03 0.387 0.274 -- 0.554 -- -0.0645 17.7 -- -- -- --
276.39 0.779 3.03 0.383 0.28 -- -- -- -0.0626 18.2 -- -- -- --
276.94 0.775 3.03 0.339 -- -0.295 -- -- -0.0594 -- 1.105 2 -- --
271.49 0.767 3.04 -- 0.434 -0.506 -- -- -0.0782 17.5 1.2 2 -- --
280.47 0.783 3.03 0.375 -- -- -- -- -0.0688 -- -- -- -- --
280.26 0.783 3.04 -- 0.275 -- -- -- -0.105 18.3 -- -- -- --
279.95 0.779 3.04 -- -- -0.322 -- -- -0.0958 -- 1.173 2 -- --
284.18 0.787 3.04 -- -- -- -- -- -0.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 256.61 wind 3.0 30 < th dose independent rect. 17 2
5 257.27 wind 1.0 10 < th dose independent rect. 22 1
7 257.27 wind 1.0 10 < th dose dependent rect. 22 1
9 257.79 wind 3.0 30 < th dose dependent rect. 17 1
10 257.87 wind 1.0 10 < th dose independent rect. 15 8
12 258.15 wind 1.0 10 < th dose independent rect. 17 6
15 258.25 wind 1.0 10 < th dose dependent rect. 15 8
16 258.36 wind 1.0 10 < th dose dependent rect. 17 6
32 258.84 temperature 25.0 30 > th dose dependent rect. 5 1
35 259.40 wind 1.0 10 < th dose dependent rect. 11 12
43 260.01 temperature 25.0 10 > th dose independent rect. 5 1
59 261.29 temperature 25.0 1440 < th dose independent rect. 22 5
60 261.36 wind 1.0 90 < th dose independent rect. 8 1
64 261.87 wind 1.0 90 < th dose dependent rect. 8 1
67 261.95 temperature 25.0 1440 < th dose independent rect. 23 2
68 262.05 humidity 90.0 90 > th dose independent rect. 9 1
70 262.05 humidity 90.0 90 > th dose dependent rect. 9 1
71 262.15 humidity 90.0 10 > th dose independent rect. 9 3
75 262.15 humidity 90.0 10 > th dose dependent rect. 9 3
84 262.20 temperature 25.0 1440 > th dose independent rect. 22 3
131 263.22 wind 3.0 43200 < th dose independent rect. 1 1
151 263.51 wind 5.0 43200 < th dose dependent rect. 23 3
158 263.61 wind 1.0 4320 > th dose independent rect. 7 1
168 263.80 radiation 10.0 90 < th dose independent rect. 8 1
173 263.96 wind 3.0 43200 > th dose independent rect. 1 1
174 263.99 wind 3.0 43200 < th dose dependent rect. 22 5
192 264.36 precipitation 0.1 270 > th dose independent rect. 8 1
193 264.36 precipitation 0.1 270 > th dose dependent rect. 8 1
194 264.37 wind 3.0 90 < th dose independent rect. 16 6
195 264.38 wind 3.0 14400 < th dose dependent rect. 1 1
199 264.46 wind 1.0 4320 < th dose independent rect. 7 1
208 264.57 temperature 25.0 10 > th dose dependent rect. 2 4
210 264.62 temperature 30.0 1440 < th dose dependent rect. 23 3
215 264.66 wind 3.0 4320 < th dose dependent rect. 7 1
217 264.69 temperature 15.0 1440 > th dose dependent rect. 23 3
229 264.77 temperature 30.0 1440 < th dose dependent rect. 1 1
239 264.81 temperature 15.0 1440 > th dose dependent rect. 1 1
248 264.84 humidity 80.0 10 > th dose dependent rect. 16 2
259 264.90 wind 1.0 10 < th dose independent rect. 12 11
269 264.96 humidity 80.0 10 > th dose dependent rect. 18 1
275 264.97 humidity 70.0 90 > th dose dependent rect. 15 4
282 265.04 wind 7.0 90 < th dose dependent rect. 16 17
284 265.05 temperature 25.0 10 > th dose independent rect. 1 5
304 265.08 wind 1.0 43200 > th dose dependent rect. 23 3
315 265.11 humidity 80.0 90 > th dose dependent rect. 16 1
363 265.30 wind 1.0 10 > th dose independent rect. 18 23
382 265.36 humidity 90.0 14400 < th dose dependent rect. 5 1
398 265.44 radiation 10.0 90 < th dose dependent rect. 8 1
414 265.51 humidity 80.0 14400 > th dose independent rect. 6 1
440 265.59 wind 3.0 14400 > th dose independent rect. 17 15
463 265.67 temperature 25.0 10 > th dose independent rect. 13 18
482 265.71 wind 3.0 14400 < th dose independent rect. 18 14
497 265.76 temperature 20.0 90 > th dose independent rect. 1 8
501 265.78 humidity 90.0 1440 > th dose dependent rect. 8 10
528 265.88 wind 3.0 90 < th dose independent rect. 1 9
541 265.91 wind 3.0 14400 < th dose independent rect. 22 17
546 265.92 wind 1.0 1440 < th dose dependent rect. 4 2
552 265.94 wind 3.0 14400 < th dose independent sin 5 NA
554 265.94 wind 3.0 14400 > th dose independent rect. 22 17
565 265.95 humidity 90.0 1440 > th dose dependent rect. 7 12
566 265.96 humidity 80.0 14400 < th dose independent rect. 5 2
570 265.97 wind 3.0 14400 > th dose independent sin 5 NA
573 265.97 humidity 90.0 720 > th dose dependent rect. 9 5
578 265.98 wind 3.0 14400 < th dose independent rect. 1 8
585 265.99 wind 1.0 14400 > th dose dependent rect. 1 1
599 266.03 wind 3.0 14400 > th dose independent rect. 1 8
606 266.05 wind 3.0 14400 < th dose independent rect. 1 13
609 266.05 wind 5.0 1440 > th dose dependent rect. 3 1
635 266.11 wind 3.0 14400 > th dose independent sin 11 NA
681 266.17 temperature 25.0 1440 < th dose independent sin 12 NA
685 266.18 wind 3.0 14400 < th dose independent sin 11 NA
703 266.20 wind 3.0 14400 > th dose independent rect. 22 11
712 266.21 humidity 90.0 14400 < th dose dependent rect. 3 4
716 266.21 humidity 90.0 90 > th dose dependent rect. 8 11
725 266.23 wind 3.0 14400 < th dose independent rect. 22 11
734 266.24 wind 5.0 90 < th dose dependent rect. 1 9
787 266.32 wind 3.0 14400 < th dose dependent rect. 18 14
805 266.35 temperature 25.0 10 < th dose dependent rect. 19 22
806 266.36 wind 3.0 43200 > th dose independent rect. 23 3
807 266.36 wind 1.0 14400 < th dose independent rect. 21 5
888 266.43 wind 1.0 14400 < th dose dependent rect. 19 9
891 266.44 temperature 20.0 10 > th dose dependent rect. 13 17
892 266.45 wind 3.0 43200 < th dose independent rect. 23 3
893 266.45 wind 1.0 14400 < th dose independent rect. 21 7
897 266.46 wind 1.0 43200 < th dose independent rect. 16 11
915 266.47 wind 3.0 14400 < th dose independent rect. 18 20
920 266.47 wind 9.0 270 < th dose dependent rect. 13 6
922 266.48 wind 1.0 14400 < th dose independent rect. 19 7
940 266.50 wind 3.0 14400 < th dose dependent sin 12 NA
943 266.51 wind 1.0 14400 > th dose independent rect. 21 5
949 266.52 wind 1.0 14400 < th dose independent rect. 19 9