Os08g0434700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os08g0434700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.7 | 0.432 | 11.1 | 0.508 | 2 | -1.96 | -0.0279 | -1.67 | -0.0345 | 8.3 | 0.48 | 1456 | -- | -- |
| 86.5 | 0.433 | 11.1 | 0.404 | 1.99 | -1.61 | 0.142 | -- | -0.0301 | 8.38 | 0.51 | 1446 | -- | -- |
| 84.56 | 0.428 | 11.1 | 0.514 | 2.01 | -2.03 | -- | -1.8 | -0.037 | 8.18 | 0.4662 | 1471 | -- | -- |
| 86.36 | 0.433 | 11.1 | 0.347 | 1.99 | -1.59 | -- | -- | -0.0275 | 8.37 | 0.51 | 1446 | -- | -- |
| 250.07 | 0.741 | 11.2 | 0.714 | -- | -0.944 | -- | -0.334 | 0.155 | -- | 1.099 | 1540 | -- | -- |
| 115.33 | 0.503 | 11.1 | 0.714 | 2.06 | -- | -0.0245 | -- | 0.154 | 8.39 | -- | -- | -- | -- |
| 115.33 | 0.503 | 11.1 | 0.713 | 2.06 | -- | -- | -- | 0.154 | 8.39 | -- | -- | -- | -- |
| 249.42 | 0.739 | 11.2 | 0.711 | -- | -0.951 | -- | -- | 0.157 | -- | 1.027 | 1536 | -- | -- |
| 89.35 | 0.44 | 11.1 | -- | 1.98 | -1.79 | -- | -- | -0.0489 | 8.27 | 0.47 | 1461 | -- | -- |
| 350.85 | 0.875 | 11.2 | 0.724 | -- | -- | -- | -- | 0.175 | -- | -- | -- | -- | -- |
| 128.73 | 0.531 | 11.1 | -- | 2.06 | -- | -- | -- | 0.0748 | 8.37 | -- | -- | -- | -- |
| 262.74 | 0.757 | 11.2 | -- | -- | -0.954 | -- | -- | 0.0784 | -- | 1.027 | 1536 | -- | -- |
| 364.69 | 0.891 | 11.2 | -- | -- | -- | -- | -- | 0.095 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.25 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 2 | 82.77 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 4 | 84.10 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 5 | 84.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 6 | 84.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 8 | 84.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 27 | 84.71 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 61 | 85.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 17 |
| 67 | 85.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 123 | 85.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 150 | 85.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 22 |
| 161 | 85.63 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 165 | 85.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 199 | 85.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 213 | 86.12 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 22 |
| 214 | 86.13 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 236 | 86.52 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 22 |
| 239 | 86.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 254 | 86.89 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 279 | 87.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 281 | 87.46 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 282 | 87.48 | radiation | 1 | 1440 | < th | dose independent | sin | 23 | NA |
| 295 | 87.58 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 308 | 87.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 311 | 87.72 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 317 | 87.76 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 330 | 87.78 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 335 | 87.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 18 |
| 363 | 87.85 | radiation | 1 | 1440 | > th | dose independent | sin | 23 | NA |
| 367 | 87.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 22 |
| 368 | 87.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 375 | 87.87 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 400 | 87.95 | radiation | 1 | 1440 | < th | dose independent | sin | 14 | NA |
| 408 | 88.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 416 | 88.05 | humidity | 90 | 720 | > th | dose dependent | sin | 20 | NA |
| 427 | 88.11 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 436 | 88.14 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 441 | 88.18 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 467 | 88.25 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 473 | 88.28 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 520 | 88.29 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 547 | 88.37 | radiation | 1 | 1440 | > th | dose independent | sin | 14 | NA |
| 555 | 88.38 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 622 | 88.69 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 641 | 88.72 | humidity | 90 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 647 | 88.74 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 673 | 88.80 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 683 | 88.83 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 687 | 88.85 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 698 | 88.91 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 710 | 88.93 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 724 | 88.94 | humidity | 90 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 799 | 89.04 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 815 | 89.08 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 820 | 89.09 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 828 | 89.10 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 831 | 89.11 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 865 | 89.20 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 866 | 89.20 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 873 | 89.22 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 877 | 89.23 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 910 | 89.30 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 975 | 89.37 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 12 |