Os08g0434000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0434000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein prenyltransferase domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.41 | 0.588 | 4.72 | 0.94 | 1.97 | -0.812 | 3.63 | 1.33 | 0.0787 | 18.6 | 9.979 | 272 | -- | -- |
| 163.8 | 0.596 | 4.72 | 0.843 | 1.97 | -0.81 | 3.34 | -- | 0.0826 | 18.7 | 9.97 | 272 | -- | -- |
| 186.98 | 0.642 | 4.7 | 0.974 | 2.4 | -0.285 | -- | 1.66 | 0.165 | 17.9 | 9.901 | 272 | -- | -- |
| 193.03 | 0.647 | 4.72 | 0.867 | 1.93 | -0.859 | -- | -- | 0.09 | 18.6 | 9.991 | 284 | -- | -- |
| 246.17 | 0.731 | 4.7 | 1.09 | -- | -2.65 | -- | 2.01 | 0.138 | -- | 5.579 | 649 | -- | -- |
| 188.65 | 0.644 | 4.72 | 0.824 | 2.39 | -- | 2.84 | -- | 0.0981 | 17.7 | -- | -- | -- | -- |
| 206.65 | 0.673 | 4.71 | 0.813 | 2.41 | -- | -- | -- | 0.112 | 17.4 | -- | -- | -- | -- |
| 223.24 | 0.696 | 4.66 | 0.865 | -- | -2.61 | -- | -- | 0.0993 | -- | 5.09 | 652 | -- | -- |
| 207.18 | 0.67 | 4.76 | -- | 1.81 | -0.938 | -- | -- | -0.0831 | 18.2 | 14.16 | 348 | -- | -- |
| 509.03 | 1.05 | 4.68 | 0.732 | -- | -- | -- | -- | 0.0525 | -- | -- | -- | -- | -- |
| 224.09 | 0.7 | 4.73 | -- | 2.4 | -- | -- | -- | 0.0214 | 17.4 | -- | -- | -- | -- |
| 235.33 | 0.714 | 4.74 | -- | -- | -2.64 | -- | -- | -0.0942 | -- | 2.285 | 648 | -- | -- |
| 523.16 | 1.07 | 4.7 | -- | -- | -- | -- | -- | -0.0287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 154.18 | radiation | 20 | 270 | < th | dose independent | rect. | 10 | 22 |
| 2 | 154.36 | radiation | 40 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 3 | 154.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 8 |
| 10 | 155.50 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 12 | 155.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 23 | 156.05 | radiation | 1 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 25 | 156.11 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 34 | 156.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 15 |
| 35 | 156.42 | radiation | 10 | 270 | < th | dose independent | rect. | 15 | 23 |
| 36 | 156.43 | radiation | 10 | 270 | < th | dose independent | rect. | 23 | 23 |
| 40 | 156.48 | radiation | 10 | 270 | < th | dose independent | no | NA | NA |
| 42 | 156.50 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 44 | 156.52 | radiation | 1 | 720 | > th | dose dependent | sin | 9 | NA |
| 46 | 156.54 | radiation | 40 | 270 | < th | dose dependent | no | NA | NA |
| 55 | 156.62 | radiation | 1 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 73 | 156.71 | radiation | 10 | 270 | < th | dose independent | rect. | 2 | 23 |
| 101 | 156.86 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 102 | 156.86 | radiation | 1 | 270 | > th | dose dependent | rect. | 4 | 15 |
| 208 | 157.02 | radiation | 1 | 270 | > th | dose dependent | sin | 2 | NA |
| 225 | 157.12 | radiation | 40 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 240 | 157.24 | radiation | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 260 | 157.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 17 |
| 300 | 157.72 | radiation | 10 | 270 | < th | dose independent | rect. | 20 | 23 |
| 314 | 157.81 | radiation | 40 | 720 | < th | dose independent | rect. | 6 | 16 |
| 342 | 158.03 | temperature | 10 | 270 | > th | dose dependent | sin | 11 | NA |
| 371 | 158.16 | temperature | 10 | 10 | > th | dose dependent | sin | 10 | NA |
| 403 | 158.28 | radiation | 10 | 720 | > th | dose independent | rect. | 6 | 4 |
| 419 | 158.30 | radiation | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 424 | 158.33 | radiation | 10 | 270 | < th | dose independent | rect. | 4 | 23 |
| 433 | 158.39 | radiation | 40 | 270 | < th | dose independent | sin | 8 | NA |
| 451 | 158.45 | radiation | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 491 | 158.58 | radiation | 1 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 570 | 159.17 | temperature | 25 | 720 | < th | dose independent | sin | 10 | NA |
| 577 | 159.21 | radiation | 40 | 720 | < th | dose independent | sin | 12 | NA |
| 644 | 159.58 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 11 |
| 685 | 159.75 | radiation | 10 | 720 | > th | dose independent | sin | 9 | NA |
| 733 | 159.95 | radiation | 40 | 720 | < th | dose independent | sin | 22 | NA |
| 883 | 160.18 | temperature | 25 | 720 | < th | dose independent | rect. | 22 | 8 |
| 899 | 160.25 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 16 |
| 912 | 160.32 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 14 |
| 931 | 160.35 | radiation | 40 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 945 | 160.41 | radiation | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 949 | 160.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 7 |
| 955 | 160.44 | radiation | 30 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 957 | 160.45 | radiation | 40 | 270 | < th | dose independent | sin | 18 | NA |
| 967 | 160.50 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 12 |