Os08g0433200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0433200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.45 | 0.454 | 12.2 | -2.37 | 0.763 | -0.553 | -0.493 | 2.48 | -0.802 | 8.57 | 82 | 270 | -- | -- |
| 109.59 | 0.488 | 12.2 | -2.27 | 0.705 | -0.488 | -0.198 | -- | -0.77 | 8.67 | 84.58 | 181 | -- | -- |
| 94.12 | 0.452 | 12.2 | -2.37 | 0.761 | -0.575 | -- | 2.4 | -0.81 | 8.54 | 83 | 253 | -- | -- |
| 109.48 | 0.487 | 12.3 | -2.27 | 0.706 | -0.532 | -- | -- | -0.815 | 8.34 | 85 | 168 | -- | -- |
| 121.69 | 0.517 | 12.3 | -2.36 | -- | -0.468 | -- | 1.62 | -0.816 | -- | 82.27 | 135 | -- | -- |
| 115.58 | 0.504 | 12.2 | -2.3 | 0.609 | -- | -0.652 | -- | -0.722 | 10.5 | -- | -- | -- | -- |
| 117.13 | 0.507 | 12.2 | -2.33 | 0.619 | -- | -- | -- | -0.725 | 10.2 | -- | -- | -- | -- |
| 131.29 | 0.536 | 12.3 | -2.29 | -- | -0.4 | -- | -- | -0.791 | -- | 82.11 | 40 | -- | -- |
| 242.01 | 0.725 | 12.2 | -- | 0.86 | -0.861 | -- | -- | -0.609 | 7.99 | 85 | 255 | -- | -- |
| 140.33 | 0.554 | 12.3 | -2.34 | -- | -- | -- | -- | -0.726 | -- | -- | -- | -- | -- |
| 260.44 | 0.755 | 12.2 | -- | 0.631 | -- | -- | -- | -0.465 | 10.4 | -- | -- | -- | -- |
| 267.18 | 0.761 | 12.2 | -- | -- | -0.58 | -- | -- | -0.583 | -- | 85.22 | 37 | -- | -- |
| 284.81 | 0.788 | 12.2 | -- | -- | -- | -- | -- | -0.467 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.90 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 11 | 85.17 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 18 | 85.39 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 34 | 85.39 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 63 | 85.79 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 9 |
| 68 | 85.83 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 75 | 85.95 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 80 | 86.02 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 84 | 86.03 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 86 | 86.06 | radiation | 40 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 87 | 86.06 | radiation | 40 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 94 | 86.09 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 100 | 86.12 | radiation | 40 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 141 | 86.35 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 145 | 86.41 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 188 | 86.79 | humidity | 70 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 199 | 86.86 | temperature | 15 | 43200 | < th | dose dependent | sin | 9 | NA |
| 215 | 86.98 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 229 | 87.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 231 | 87.07 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 248 | 87.17 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 266 | 87.29 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 274 | 87.34 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 5 |
| 290 | 87.41 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 5 |
| 293 | 87.41 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 295 | 87.41 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 296 | 87.42 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 302 | 87.43 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 303 | 87.43 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 314 | 87.44 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 12 |
| 385 | 87.68 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 405 | 87.76 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 411 | 87.79 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 415 | 87.80 | temperature | 15 | 43200 | > th | dose independent | sin | 9 | NA |
| 421 | 87.82 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 456 | 87.94 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 474 | 88.00 | humidity | 70 | 43200 | > th | dose dependent | rect. | 2 | 15 |
| 498 | 88.07 | humidity | 70 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 507 | 88.11 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 508 | 88.11 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 14 |
| 511 | 88.11 | humidity | 80 | 43200 | > th | dose dependent | rect. | 23 | 18 |
| 517 | 88.13 | humidity | 80 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 523 | 88.14 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 574 | 88.26 | humidity | 70 | 43200 | > th | dose independent | rect. | 21 | 10 |
| 665 | 88.49 | temperature | 15 | 43200 | < th | dose independent | sin | 9 | NA |
| 708 | 88.56 | humidity | 70 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 767 | 88.71 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 768 | 88.71 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 9 |
| 773 | 88.73 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 14 |
| 775 | 88.74 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 783 | 88.75 | temperature | 20 | 43200 | < th | dose dependent | rect. | 7 | 13 |
| 793 | 88.77 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 821 | 88.83 | temperature | 20 | 43200 | < th | dose dependent | rect. | 14 | 6 |
| 829 | 88.85 | temperature | 20 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 861 | 88.91 | temperature | 20 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 956 | 89.08 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 19 |
| 997 | 89.17 | temperature | 20 | 43200 | < th | dose dependent | rect. | 14 | 1 |