Os08g0430300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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Os08g0430300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.62 | 0.575 | 7.69 | 0.344 | 0.53 | -1.04 | 0.307 | -0.413 | 0.577 | 20.4 | 70 | 1449 | -- | -- |
| 149.99 | 0.57 | 7.68 | 0.399 | 0.528 | -1.08 | 0.307 | -- | 0.594 | 20.3 | 69.54 | 1457 | -- | -- |
| 149.89 | 0.57 | 7.68 | 0.336 | 0.53 | -1.05 | -- | -0.42 | 0.578 | 20.3 | 69.86 | 1457 | -- | -- |
| 147.8 | 0.566 | 7.71 | 0.372 | 0.571 | -1.09 | -- | -- | 0.446 | 20.9 | 67.18 | 1399 | -- | -- |
| 165.43 | 0.599 | 7.68 | 0.327 | -- | -1.07 | -- | -0.377 | 0.568 | -- | 69.73 | 1461 | -- | -- |
| 194.31 | 0.653 | 7.7 | 0.162 | 0.554 | -- | 0.255 | -- | 0.507 | 20.2 | -- | -- | -- | -- |
| 194.51 | 0.653 | 7.7 | 0.155 | 0.553 | -- | -- | -- | 0.507 | 20.2 | -- | -- | -- | -- |
| 165.2 | 0.599 | 7.7 | 0.355 | -- | -1.05 | -- | -- | 0.44 | -- | 67.25 | 1450 | -- | -- |
| 151.22 | 0.573 | 7.72 | -- | 0.555 | -1.03 | -- | -- | 0.425 | 20.9 | 67 | 1414 | -- | -- |
| 211.36 | 0.679 | 7.68 | 0.15 | -- | -- | -- | -- | 0.5 | -- | -- | -- | -- | -- |
| 195.14 | 0.653 | 7.7 | -- | 0.553 | -- | -- | -- | 0.49 | 20.2 | -- | -- | -- | -- |
| 168.38 | 0.604 | 7.7 | -- | -- | -1 | -- | -- | 0.404 | -- | 67.26 | 1470 | -- | -- |
| 211.95 | 0.68 | 7.69 | -- | -- | -- | -- | -- | 0.484 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.08 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 6 | 140.49 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 6 |
| 8 | 140.80 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 8 |
| 41 | 142.20 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 47 | 142.33 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 48 | 142.35 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 53 | 142.46 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 54 | 142.46 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 7 |
| 64 | 142.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 8 |
| 84 | 143.00 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 96 | 143.33 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 112 | 143.68 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 113 | 143.70 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 115 | 143.70 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 116 | 143.72 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 121 | 143.84 | wind | 3.0 | 43200 | > th | dose independent | rect. | 23 | 10 |
| 129 | 143.97 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 130 | 143.97 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 139 | 144.05 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 142 | 144.07 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 143 | 144.07 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 151 | 144.10 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 152 | 144.10 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 156 | 144.16 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 196 | 144.63 | wind | 9.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 210 | 144.77 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 213 | 144.85 | wind | 3.0 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 214 | 144.85 | wind | 3.0 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 231 | 144.99 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 251 | 145.16 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 265 | 145.32 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 266 | 145.32 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 278 | 145.41 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 285 | 145.53 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 308 | 145.74 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 338 | 145.99 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 388 | 146.47 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 442 | 146.96 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 1 | 14 |
| 443 | 146.98 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 477 | 147.32 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 5 |
| 478 | 147.33 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 487 | 147.37 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 12 | 2 |
| 493 | 147.41 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 495 | 147.42 | wind | 7.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 497 | 147.42 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 527 | 147.59 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 531 | 147.60 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 547 | 147.68 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 1 | 15 |
| 559 | 147.73 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 2 | 13 |
| 643 | 147.98 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 670 | 148.00 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 710 | 148.17 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 720 | 148.19 | temperature | 25.0 | 14400 | > th | dose independent | sin | 3 | NA |
| 755 | 148.28 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 798 | 148.42 | wind | 1.0 | 43200 | > th | dose dependent | sin | 8 | NA |
| 851 | 148.54 | wind | 9.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 865 | 148.60 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 882 | 148.62 | temperature | 25.0 | 14400 | < th | dose independent | sin | 3 | NA |
| 888 | 148.63 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 892 | 148.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 900 | 148.66 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 978 | 148.84 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 980 | 148.84 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 985 | 148.85 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 1 |