Os08g0429200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os08g0429200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.47 | 0.452 | 8.16 | -0.224 | 0.102 | -0.93 | -0.614 | 0.423 | -0.462 | 21.7 | 72.67 | 409 | -- | -- |
| 92.76 | 0.449 | 8.17 | -0.199 | 0.124 | -0.893 | -0.688 | -- | -0.463 | 20.9 | 73.39 | 408 | -- | -- |
| 92.53 | 0.448 | 8.17 | -0.247 | 0.196 | -0.951 | -- | 0.811 | -0.508 | 15.9 | 77.33 | 516 | -- | -- |
| 93.32 | 0.45 | 8.17 | -0.135 | 0.243 | -0.879 | -- | -- | -0.472 | 16.7 | 80 | 497 | -- | -- |
| 93.65 | 0.451 | 8.16 | -0.194 | -- | -1.02 | -- | 0.677 | -0.481 | -- | 77.3 | 453 | -- | -- |
| 106.52 | 0.484 | 8.16 | -0.228 | 0.73 | -- | -0.425 | -- | -0.365 | 18.2 | -- | -- | -- | -- |
| 106.93 | 0.484 | 8.16 | -0.223 | 0.729 | -- | -- | -- | -0.366 | 18.1 | -- | -- | -- | -- |
| 94.63 | 0.453 | 8.17 | -0.143 | -- | -1.02 | -- | -- | -0.479 | -- | 77.65 | 451 | -- | -- |
| 93.85 | 0.451 | 8.17 | -- | 0.237 | -0.894 | -- | -- | -0.456 | 16.6 | 80 | 496 | -- | -- |
| 134.46 | 0.542 | 8.15 | -0.244 | -- | -- | -- | -- | -0.382 | -- | -- | -- | -- | -- |
| 108.24 | 0.487 | 8.15 | -- | 0.732 | -- | -- | -- | -0.341 | 18.1 | -- | -- | -- | -- |
| 95.12 | 0.454 | 8.17 | -- | -- | -1.03 | -- | -- | -0.471 | -- | 78.68 | 445 | -- | -- |
| 136.02 | 0.544 | 8.14 | -- | -- | -- | -- | -- | -0.355 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.02 | humidity | 90 | 270 | > th | dose dependent | rect. | 5 | 17 |
| 2 | 88.07 | humidity | 90 | 270 | > th | dose dependent | sin | 22 | NA |
| 3 | 88.16 | humidity | 90 | 270 | < th | dose independent | rect. | 6 | 11 |
| 6 | 88.34 | humidity | 90 | 270 | < th | dose independent | sin | 0 | NA |
| 11 | 88.72 | humidity | 90 | 90 | > th | dose dependent | rect. | 7 | 14 |
| 20 | 89.47 | humidity | 80 | 720 | > th | dose dependent | sin | 2 | NA |
| 24 | 89.90 | humidity | 90 | 270 | > th | dose independent | rect. | 5 | 16 |
| 25 | 89.95 | humidity | 90 | 90 | > th | dose independent | sin | 22 | NA |
| 28 | 90.02 | humidity | 80 | 720 | > th | dose dependent | rect. | 4 | 12 |
| 47 | 90.39 | humidity | 90 | 90 | > th | dose independent | rect. | 7 | 14 |
| 111 | 91.28 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 115 | 91.32 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 3 |
| 142 | 91.56 | humidity | 80 | 720 | > th | dose dependent | rect. | 24 | 21 |
| 143 | 91.57 | radiation | 1 | 720 | < th | dose dependent | sin | 3 | NA |
| 154 | 91.62 | humidity | 70 | 270 | > th | dose dependent | rect. | 16 | 20 |
| 172 | 91.73 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 7 |
| 176 | 91.74 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 10 |
| 218 | 92.05 | humidity | 80 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 227 | 92.08 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 9 |
| 241 | 92.18 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 14 |
| 252 | 92.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 20 |
| 259 | 92.25 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 18 |
| 267 | 92.29 | radiation | 1 | 720 | > th | dose independent | rect. | 6 | 9 |
| 284 | 92.35 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 1 |
| 376 | 92.65 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 415 | 92.79 | humidity | 90 | 270 | < th | dose independent | rect. | 21 | 20 |
| 461 | 92.95 | radiation | 1 | 720 | > th | dose independent | sin | 3 | NA |
| 470 | 92.98 | radiation | 1 | 270 | < th | dose dependent | rect. | 4 | 16 |
| 474 | 92.99 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 16 |
| 477 | 93.00 | wind | 3 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 482 | 93.01 | humidity | 90 | 270 | < th | dose independent | rect. | 20 | 22 |
| 494 | 93.05 | radiation | 1 | 720 | < th | dose independent | sin | 3 | NA |
| 504 | 93.07 | humidity | 90 | 270 | > th | dose independent | rect. | 5 | 9 |
| 506 | 93.07 | radiation | 40 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 529 | 93.12 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 16 |
| 592 | 93.26 | humidity | 90 | 270 | > th | dose independent | rect. | 5 | 7 |
| 648 | 93.39 | wind | 5 | 270 | > th | dose independent | rect. | 6 | 9 |
| 663 | 93.41 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 7 |
| 678 | 93.44 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 20 |
| 745 | 93.57 | radiation | 1 | 270 | < th | dose independent | rect. | 6 | 13 |
| 753 | 93.59 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 22 |
| 759 | 93.60 | humidity | 70 | 270 | > th | dose dependent | no | NA | NA |
| 788 | 93.66 | radiation | 1 | 270 | < th | dose dependent | sin | 0 | NA |
| 818 | 93.69 | wind | 1 | 90 | > th | dose dependent | rect. | 22 | 19 |
| 821 | 93.70 | radiation | 1 | 270 | < th | dose independent | rect. | 4 | 16 |
| 841 | 93.74 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 17 |
| 899 | 93.83 | radiation | 1 | 720 | < th | dose independent | rect. | 18 | 22 |
| 909 | 93.85 | radiation | 1 | 720 | < th | dose dependent | sin | 10 | NA |
| 927 | 93.89 | radiation | 1 | 270 | < th | dose independent | sin | 0 | NA |
| 933 | 93.89 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 994 | 93.99 | humidity | 90 | 720 | < th | dose independent | rect. | 5 | 19 |