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Os08g0428900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Chaperonin Cpn60/TCP-1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.1 (0.0175) R2 : 0.813
β1 : 1.21 (0.064) R2dD : 0.152 R2D : 0.0623
β2 : 1.69 (0.0435) R2dC : 0.625 R2C : 0.6
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.511 (0.0373) R2dN8 : 0.103 R2N8 : 0.0375
σ : 0.329
deviance : 49.27
__
_____
C
peak time of C : 8.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.46 0.303 12.1 1.18 1.29 0.581 -0.0116 -0.35 0.488 7.46 1.01 31 -- --
41.93 0.302 12.1 1.19 1.3 0.574 -0.263 -- 0.494 7.48 1.02 34 -- --
41.45 0.3 12.1 1.18 1.29 0.582 -- -0.351 0.488 7.45 1.01 32 -- --
42.05 0.302 12.1 1.18 1.3 0.584 -- -- 0.489 7.44 1.02 36 -- --
108.66 0.488 12.1 1.18 -- 0.961 -- -0.431 0.504 -- 1.01 32 -- --
48.84 0.328 12.1 1.22 1.69 -- -0.355 -- 0.511 8.89 -- -- -- --
49.27 0.329 12.1 1.21 1.69 -- -- -- 0.511 8.9 -- -- -- --
109.88 0.49 12.1 1.18 -- 0.958 -- -- 0.506 -- 1.01 32 -- --
79.06 0.414 12.1 -- 1.36 0.574 -- -- 0.379 7.46 0.8101 33 -- --
213.04 0.682 12.1 1.21 -- -- -- -- 0.523 -- -- -- -- --
87.88 0.439 12.1 -- 1.7 -- -- -- 0.376 8.84 -- -- -- --
146.87 0.566 12.2 -- -- 0.966 -- -- 0.374 -- 1.02 38 -- --
251.67 0.74 12.2 -- -- -- -- -- 0.389 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.35 temperature 10.0 720 > th dose dependent rect. 5 1
4 38.44 temperature 20.0 10 > th dose independent rect. 1 4
7 39.33 radiation 20.0 30 < th dose dependent rect. 16 13
10 39.49 radiation 10.0 30 < th dose independent rect. 16 13
14 39.68 atmosphere 995.0 720 > th dose independent rect. 19 21
20 39.88 radiation 20.0 720 < th dose independent rect. 4 3
22 39.90 atmosphere 995.0 270 > th dose independent rect. 18 13
26 39.97 radiation 10.0 720 < th dose independent rect. 5 1
28 39.97 radiation 1.0 30 > th dose independent rect. 18 23
30 39.98 wind 7.0 720 < th dose independent rect. 19 12
31 40.03 radiation 20.0 720 < th dose independent rect. 19 12
34 40.08 precipitation 0.1 720 < th dose independent rect. 16 3
36 40.08 precipitation 0.1 720 < th dose dependent rect. 16 3
38 40.15 wind 7.0 720 < th dose independent rect. 4 3
43 40.21 radiation 30.0 720 < th dose independent rect. 16 3
44 40.22 atmosphere 995.0 720 > th dose independent rect. 11 5
45 40.22 radiation 40.0 90 < th dose independent rect. 5 11
51 40.24 precipitation 0.1 720 < th dose independent rect. 4 3
52 40.24 precipitation 0.1 720 < th dose independent rect. 7 12
53 40.24 precipitation 0.1 720 < th dose dependent rect. 4 3
54 40.24 precipitation 0.1 720 < th dose dependent rect. 7 12
55 40.25 temperature 10.0 720 > th dose independent rect. 16 3
56 40.25 atmosphere 1015.0 720 < th dose independent rect. 16 3
58 40.25 temperature 10.0 720 > th dose independent rect. 19 21
60 40.26 temperature 10.0 270 > th dose independent rect. 7 11
61 40.26 atmosphere 1015.0 270 < th dose independent rect. 7 11
62 40.26 temperature 10.0 270 > th dose independent rect. 18 13
63 40.26 humidity 50.0 270 > th dose independent rect. 18 13
69 40.28 temperature 10.0 720 > th dose independent rect. 4 3
70 40.28 temperature 30.0 720 < th dose independent rect. 4 3
71 40.28 humidity 50.0 720 > th dose independent rect. 4 3
74 40.28 atmosphere 995.0 720 > th dose independent rect. 4 3
75 40.28 atmosphere 1015.0 720 < th dose independent rect. 4 3
79 40.28 temperature 10.0 720 > th dose independent rect. 7 21
80 40.29 humidity 50.0 30 > th dose independent rect. 17 12
81 40.29 radiation 40.0 720 < th dose dependent rect. 17 1
82 40.29 radiation 40.0 720 < th dose dependent rect. 4 3
84 40.31 wind 9.0 720 < th dose independent rect. 19 21
85 40.31 temperature 15.0 10 > th dose dependent rect. 1 4
94 40.38 temperature 30.0 720 < th dose independent rect. 19 12
98 40.38 radiation 1.0 30 > th dose independent rect. 5 12
111 40.39 wind 7.0 720 < th dose independent rect. 19 4
115 40.44 temperature 10.0 720 > th dose independent rect. 17 1
116 40.44 atmosphere 1015.0 720 < th dose independent rect. 17 1
117 40.44 radiation 30.0 720 < th dose independent rect. 17 1
119 40.44 temperature 10.0 720 > th dose independent rect. 18 23
121 40.46 wind 7.0 720 < th dose independent rect. 5 1
123 40.46 temperature 10.0 720 > th dose independent rect. 5 1
124 40.46 temperature 30.0 720 < th dose independent rect. 5 1
125 40.46 humidity 50.0 720 > th dose independent rect. 5 1
128 40.46 atmosphere 995.0 720 > th dose independent rect. 5 1
129 40.46 atmosphere 1015.0 720 < th dose independent rect. 5 1
133 40.46 temperature 10.0 720 > th dose independent rect. 6 23
134 40.47 precipitation 0.1 720 < th dose independent rect. 5 1
135 40.47 precipitation 0.1 720 < th dose dependent rect. 5 1
136 40.49 wind 1.0 720 > th dose independent rect. 16 3
140 40.50 radiation 10.0 30 < th dose independent rect. 14 15
142 40.51 wind 1.0 720 > th dose independent rect. 17 1
152 40.55 radiation 40.0 720 < th dose dependent rect. 5 1
166 40.58 radiation 1.0 30 > th dose independent rect. 5 4
183 40.58 radiation 40.0 720 < th dose dependent rect. 19 12
188 40.62 radiation 1.0 30 > th dose independent sin 10 NA
189 40.62 precipitation 0.1 720 < th dose independent rect. 17 1
192 40.62 precipitation 0.1 720 < th dose dependent rect. 17 1
194 40.63 precipitation 0.1 30 < th dose independent rect. 5 12
196 40.63 precipitation 0.1 30 < th dose dependent rect. 5 12
198 40.64 temperature 10.0 30 > th dose independent rect. 5 12
200 40.64 temperature 10.0 30 > th dose independent rect. 17 12
201 40.64 atmosphere 1015.0 30 < th dose independent rect. 5 12
209 40.65 atmosphere 995.0 720 > th dose independent rect. 4 11
215 40.68 temperature 20.0 720 > th dose independent rect. 5 1
218 40.70 temperature 10.0 720 > th dose independent rect. 23 5
219 40.70 temperature 30.0 720 < th dose independent rect. 23 5
220 40.70 humidity 50.0 720 > th dose independent rect. 23 5
223 40.70 atmosphere 995.0 720 > th dose independent rect. 23 5
224 40.70 radiation 1.0 720 < th dose independent rect. 23 5
229 40.70 atmosphere 995.0 30 > th dose independent rect. 5 12
231 40.70 temperature 10.0 720 > th dose independent rect. 4 19
232 40.70 radiation 1.0 720 < th dose dependent rect. 23 5
239 40.72 humidity 50.0 720 > th dose dependent rect. 5 1
240 40.73 wind 9.0 720 < th dose independent rect. 23 5
242 40.74 wind 9.0 30 < th dose independent rect. 17 12
250 40.78 temperature 10.0 720 > th dose independent rect. 11 5
251 40.78 atmosphere 1015.0 720 < th dose independent rect. 11 5
260 40.78 temperature 10.0 720 > th dose independent rect. 16 19
266 40.83 temperature 10.0 270 > th dose independent rect. 11 12
267 40.83 temperature 10.0 270 > th dose independent rect. 23 12
268 40.83 atmosphere 995.0 270 > th dose independent rect. 23 12
270 40.84 wind 9.0 270 < th dose independent rect. 7 11
271 40.84 wind 9.0 270 < th dose independent rect. 23 12
273 40.84 radiation 40.0 30 < th dose independent rect. 5 20
274 40.85 humidity 50.0 720 > th dose dependent rect. 4 3
276 40.86 atmosphere 995.0 720 > th dose independent rect. 3 13
294 40.89 precipitation 0.1 30 < th dose independent rect. 17 12
295 40.89 precipitation 0.1 30 < th dose dependent rect. 17 12
307 40.93 humidity 50.0 720 > th dose independent rect. 17 1
308 40.93 temperature 10.0 720 > th dose independent rect. 19 4
309 40.93 temperature 30.0 720 < th dose independent rect. 19 4
310 40.93 humidity 50.0 720 > th dose independent rect. 19 4
311 40.93 atmosphere 995.0 720 > th dose independent rect. 19 4
312 40.93 radiation 1.0 720 < th dose independent rect. 19 4
318 40.93 temperature 10.0 720 > th dose independent rect. 23 20
322 40.93 radiation 1.0 720 < th dose dependent rect. 19 4
341 40.95 radiation 10.0 720 < th dose independent rect. 20 10
342 40.95 humidity 50.0 270 > th dose independent rect. 23 12
353 40.96 precipitation 0.1 270 < th dose independent rect. 18 13
354 40.96 precipitation 0.1 270 < th dose dependent rect. 18 13
359 40.97 wind 5.0 30 < th dose dependent rect. 5 4
362 41.01 radiation 20.0 30 < th dose independent rect. 5 11
364 41.02 precipitation 0.1 720 < th dose independent rect. 7 4
365 41.02 precipitation 0.1 720 < th dose dependent rect. 7 4
366 41.02 humidity 50.0 30 > th dose dependent rect. 16 13
369 41.03 temperature 15.0 30 > th dose dependent rect. 5 4
371 41.04 radiation 40.0 720 < th dose dependent rect. 16 3
375 41.05 temperature 10.0 720 > th dose independent rect. 7 4
376 41.05 atmosphere 995.0 720 > th dose independent rect. 7 4
377 41.05 atmosphere 1015.0 720 < th dose independent rect. 7 4
378 41.05 wind 9.0 30 < th dose independent rect. 5 12
379 41.05 wind 9.0 270 < th dose independent rect. 11 12
380 41.05 temperature 10.0 720 > th dose independent rect. 11 20
385 41.06 wind 9.0 720 < th dose dependent rect. 5 1
389 41.07 precipitation 0.1 720 < th dose independent rect. 11 5
390 41.07 atmosphere 995.0 720 > th dose independent rect. 4 19
391 41.07 precipitation 0.1 720 < th dose dependent rect. 11 5
396 41.09 wind 9.0 720 < th dose independent rect. 7 4
401 41.11 wind 7.0 720 < th dose independent rect. 20 10
402 41.12 atmosphere 995.0 30 > th dose independent rect. 17 12
420 41.15 wind 9.0 720 < th dose independent rect. 11 5
422 41.15 temperature 30.0 90 < th dose independent rect. 17 12
437 41.17 precipitation 0.1 270 < th dose independent rect. 3 12
438 41.17 precipitation 0.1 270 < th dose dependent rect. 3 12
439 41.18 radiation 1.0 30 < th dose independent sin 9 NA
451 41.20 wind 3.0 30 < th dose independent rect. 5 4
452 41.20 precipitation 0.1 720 < th dose independent rect. 23 5
454 41.20 precipitation 0.1 720 < th dose dependent rect. 23 5
460 41.21 radiation 40.0 90 < th dose dependent rect. 5 11
472 41.24 wind 9.0 720 < th dose independent rect. 16 3
482 41.24 atmosphere 995.0 270 > th dose independent rect. 11 12
498 41.26 wind 9.0 720 < th dose independent rect. 11 20
500 41.27 wind 9.0 720 < th dose independent rect. 17 1
513 41.28 precipitation 0.1 270 < th dose independent rect. 15 12
516 41.28 precipitation 0.1 270 < th dose dependent rect. 15 12
529 41.31 humidity 50.0 720 > th dose independent rect. 7 4
530 41.31 precipitation 0.1 720 < th dose independent rect. 19 21
531 41.31 precipitation 0.1 720 < th dose dependent rect. 19 21
540 41.34 temperature 10.0 720 > th dose independent rect. 4 11
541 41.34 atmosphere 1015.0 720 < th dose independent rect. 4 11
543 41.34 temperature 10.0 720 > th dose independent rect. 15 13
545 41.34 wind 1.0 720 > th dose dependent rect. 17 1
558 41.35 temperature 10.0 720 > th dose independent rect. 16 11
562 41.35 temperature 10.0 720 > th dose independent rect. 3 13
588 41.37 atmosphere 995.0 720 > th dose independent rect. 18 7
630 41.41 temperature 10.0 30 > th dose dependent rect. 5 12
643 41.43 precipitation 0.1 270 < th dose independent rect. 23 12
649 41.43 precipitation 0.1 270 < th dose dependent rect. 23 12
668 41.44 precipitation 0.1 720 < th dose independent rect. 7 20
671 41.44 precipitation 0.1 720 < th dose dependent rect. 7 20
679 41.45 wind 9.0 720 < th dose independent rect. 4 19
689 41.45 wind 5.0 90 < th dose dependent rect. 5 2
695 41.47 precipitation 0.1 720 < th dose independent rect. 20 10
698 41.47 precipitation 0.1 720 < th dose dependent rect. 20 10
700 41.48 humidity 50.0 10 > th dose independent rect. 5 11
702 41.48 radiation 10.0 30 < th dose dependent sin 11 NA
703 41.49 radiation 1.0 30 > th dose independent no NA NA
704 41.49 radiation 20.0 30 < th dose independent rect. 5 9
763 41.50 radiation 1.0 30 < th dose independent no NA NA
764 41.50 radiation 20.0 30 < th dose independent rect. 5 20
768 41.50 radiation 1.0 30 > th dose independent rect. 11 23
796 41.54 temperature 10.0 720 > th dose independent rect. 20 10
797 41.54 temperature 30.0 720 < th dose independent rect. 20 10
798 41.54 humidity 50.0 720 > th dose independent rect. 20 10
801 41.54 atmosphere 995.0 720 > th dose independent rect. 20 10
806 41.54 temperature 10.0 720 > th dose independent rect. 6 14
807 41.54 atmosphere 1015.0 720 < th dose independent rect. 6 14
814 41.56 wind 3.0 90 < th dose independent rect. 5 2
816 41.56 wind 9.0 720 < th dose independent rect. 18 7
821 41.57 wind 9.0 720 < th dose independent rect. 4 11
844 41.61 radiation 20.0 90 < th dose independent rect. 5 4
853 41.63 humidity 50.0 90 > th dose dependent rect. 5 11
855 41.64 humidity 90.0 720 < th dose independent rect. 16 3
885 41.64 humidity 80.0 30 > th dose dependent rect. 24 5
894 41.67 wind 9.0 720 < th dose independent rect. 3 13
898 41.67 precipitation 0.1 720 < th dose independent rect. 16 19
902 41.67 precipitation 0.1 720 < th dose dependent rect. 16 19
905 41.68 atmosphere 995.0 30 > th dose dependent rect. 5 4
909 41.69 precipitation 0.1 270 < th dose independent rect. 11 12
913 41.69 precipitation 0.1 270 < th dose dependent rect. 11 12
917 41.70 wind 1.0 270 > th dose independent rect. 11 12
943 41.74 humidity 90.0 720 < th dose independent rect. 17 1
958 41.75 wind 9.0 30 < th dose independent rect. 9 20
959 41.75 radiation 40.0 720 < th dose dependent rect. 20 10
983 41.79 humidity 70.0 30 > th dose independent rect. 5 11
985 41.79 atmosphere 1015.0 270 < th dose independent rect. 23 12
995 41.81 precipitation 0.1 720 < th dose independent rect. 23 20
997 41.81 precipitation 0.1 720 < th dose dependent rect. 23 20
998 41.82 humidity 70.0 30 > th dose independent rect. 5 4