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Os08g0428300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RNA polymerase subunit (Isoform B).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.52 (0.0333) R2 : 0.382
β1 : 1.3 (0.121) R2dD : 0.163 R2D : 0.122
β2 : 2.92 (0.237) R2dC : 1.87 R2C : -1.64
β3 : 2.72 (0.225) R2dE : 1.81 R2E : -1.66
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.382 (0.0707) R2dN8 : 0.0534 R2N8 : -0.00815
σ : 0.617
deviance : 175.72
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_____
C
peak time of C : 12.7
E
wheather : temperature
threshold : 16.01
memory length : 364
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.6
open length of G : 9.07

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
172 0.616 6.53 1.37 2.25 2.04 -1.24 -1.98 0.397 13.1 15.91 310 17.6 8.48
173.23 0.613 6.5 1.26 2.98 2.79 0.908 -- 0.41 12.7 16.07 362 16.7 8.98
172.93 0.612 6.54 1.33 2.3 2.09 -- -0.909 0.373 13.1 15.97 314 17.5 8.57
175.72 0.617 6.52 1.3 2.92 2.72 -- -- 0.382 12.7 16.01 364 16.6 9.07
222.03 0.694 6.59 1.29 -- 1.06 -- -0.256 0.27 -- 14.48 1472 18.4 8.45
223.06 0.7 6.57 1.36 0.459 -- -0.605 -- 0.328 17.3 -- -- -- --
223.7 0.7 6.57 1.36 0.457 -- -- -- 0.326 16.7 -- -- -- --
215.84 0.684 6.58 1.28 -- 2.41 -- -- 0.279 -- 14.45 1458 18.8 7.24
220.02 0.691 6.54 -- 3.14 2.91 -- -- 0.242 12.7 15.75 366 16.5 9.28
234.78 0.716 6.57 1.34 -- -- -- -- 0.314 -- -- -- -- --
272.39 0.772 6.61 -- 0.433 -- -- -- 0.174 16.8 -- -- -- --
256.17 0.745 6.57 -- -- 3.26 -- -- 0.212 -- 14.4 1453 18.9 7.23
282.28 0.784 6.6 -- -- -- -- -- 0.165 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 174.48 temperature 15.0 270 > th dose independent rect. 18 8
3 176.48 temperature 15.0 270 > th dose independent rect. 8 16
8 178.73 temperature 15.0 270 > th dose independent rect. 19 18
27 182.35 temperature 15.0 30 > th dose dependent rect. 2 7
46 184.46 temperature 15.0 1440 > th dose independent rect. 10 6
47 184.53 atmosphere 995.0 90 > th dose dependent rect. 9 6
51 184.72 humidity 90.0 30 < th dose independent rect. 9 6
56 185.11 temperature 30.0 270 < th dose independent rect. 7 6
57 185.17 radiation 40.0 90 < th dose independent rect. 15 18
63 185.50 temperature 30.0 90 < th dose independent rect. 9 6
66 185.62 temperature 15.0 90 > th dose independent rect. 9 6
69 185.74 radiation 1.0 10 > th dose independent rect. 9 6
71 185.79 wind 9.0 10 < th dose independent rect. 9 6
72 185.79 radiation 40.0 90 < th dose independent rect. 13 20
74 185.83 wind 9.0 30 < th dose independent rect. 15 18
81 185.91 temperature 10.0 1440 > th dose independent rect. 16 18
84 185.92 precipitation 0.1 30 < th dose independent rect. 9 6
85 185.92 precipitation 0.1 30 < th dose dependent rect. 9 6
90 185.94 atmosphere 995.0 30 > th dose independent rect. 9 6
91 185.94 atmosphere 1015.0 30 < th dose independent rect. 9 6
93 185.94 temperature 10.0 30 > th dose independent rect. 15 18
106 186.20 precipitation 0.1 30 < th dose independent rect. 15 18
108 186.20 precipitation 0.1 30 < th dose dependent rect. 15 18
112 186.39 radiation 1.0 270 > th dose independent rect. 7 6
115 186.46 temperature 15.0 1440 > th dose independent rect. 10 4
123 186.62 temperature 15.0 270 > th dose independent rect. 7 6
129 186.87 temperature 20.0 10 > th dose independent rect. 2 7
146 187.26 wind 1.0 10 > th dose independent rect. 9 6
167 187.71 temperature 10.0 10 > th dose dependent rect. 15 18
178 187.86 temperature 30.0 30 < th dose independent rect. 9 17
179 187.86 atmosphere 1015.0 30 < th dose independent rect. 15 18
183 187.87 temperature 10.0 270 > th dose independent rect. 13 18
192 188.28 atmosphere 995.0 30 > th dose independent rect. 15 18
197 188.44 wind 1.0 270 > th dose independent rect. 7 6
199 188.46 humidity 90.0 270 < th dose dependent rect. 19 16
205 188.62 wind 9.0 10 < th dose independent rect. 9 17
206 188.62 wind 9.0 270 < th dose independent rect. 13 18
207 188.65 temperature 15.0 10 > th dose independent rect. 20 19
218 188.78 precipitation 0.1 270 < th dose independent rect. 13 18
219 188.78 precipitation 0.1 270 < th dose dependent rect. 13 18
232 189.05 precipitation 0.1 30 < th dose independent rect. 2 7
233 189.05 precipitation 0.1 30 < th dose dependent rect. 2 7
239 189.09 wind 7.0 10 < th dose independent rect. 2 7
242 189.15 temperature 10.0 1440 > th dose independent rect. 3 7
245 189.15 atmosphere 995.0 1440 > th dose independent rect. 3 7
246 189.15 temperature 10.0 1440 > th dose independent rect. 10 17
252 189.18 atmosphere 1015.0 270 < th dose dependent rect. 12 7
256 189.25 temperature 10.0 30 > th dose independent rect. 2 7
258 189.25 temperature 30.0 30 < th dose independent rect. 2 7
259 189.25 humidity 50.0 30 > th dose independent rect. 2 7
261 189.25 atmosphere 995.0 30 > th dose independent rect. 2 7
262 189.25 atmosphere 1015.0 30 < th dose independent rect. 2 7
278 189.43 humidity 50.0 270 > th dose independent rect. 7 6
279 189.43 atmosphere 995.0 30 > th dose independent rect. 9 17
282 189.45 wind 9.0 30 < th dose dependent rect. 2 7
283 189.48 humidity 50.0 90 > th dose independent rect. 9 6
301 189.62 radiation 40.0 30 < th dose independent rect. 2 7
313 189.78 atmosphere 1005.0 90 > th dose independent rect. 9 6
320 189.86 temperature 30.0 270 < th dose independent rect. 7 19
324 189.90 precipitation 0.1 30 < th dose independent rect. 9 17
325 189.90 precipitation 0.1 30 < th dose dependent rect. 9 17
333 189.97 temperature 30.0 270 < th dose independent rect. 8 3
343 190.05 temperature 15.0 10 > th dose independent rect. 20 8
346 190.09 temperature 15.0 10 > th dose independent rect. 20 6
367 190.28 humidity 50.0 270 > th dose dependent rect. 1 7
387 190.40 wind 1.0 10 > th dose independent rect. 9 19
391 190.41 humidity 80.0 270 < th dose independent rect. 19 18
395 190.43 atmosphere 995.0 270 > th dose independent rect. 13 18
399 190.48 humidity 50.0 270 > th dose dependent rect. 23 9
401 190.50 wind 9.0 30 < th dose dependent rect. 15 18
402 190.50 radiation 40.0 90 < th dose dependent rect. 13 20
406 190.52 temperature 15.0 1440 > th dose independent rect. 14 7
408 190.55 atmosphere 995.0 270 > th dose dependent rect. 9 2
415 190.59 temperature 15.0 270 > th dose independent rect. 8 3
416 190.60 radiation 1.0 270 > th dose independent rect. 8 3
421 190.66 wind 7.0 270 < th dose independent rect. 9 1
424 190.68 humidity 50.0 270 > th dose independent rect. 18 8
425 190.68 radiation 20.0 270 < th dose independent rect. 18 8
428 190.68 temperature 10.0 270 > th dose independent rect. 2 16
429 190.68 atmosphere 1015.0 270 < th dose independent rect. 2 16
433 190.72 radiation 1.0 270 > th dose independent rect. 9 1
443 190.77 radiation 40.0 270 < th dose dependent rect. 18 8
444 190.79 humidity 80.0 270 > th dose independent rect. 1 7
445 190.80 temperature 15.0 270 > th dose independent rect. 9 1
446 190.80 atmosphere 995.0 270 > th dose independent rect. 18 8
450 190.82 wind 9.0 270 < th dose independent rect. 18 8
453 190.85 atmosphere 1015.0 270 < th dose independent rect. 13 18
464 190.94 temperature 15.0 1440 > th dose independent rect. 16 5
474 191.03 wind 9.0 270 < th dose independent rect. 7 18
526 191.29 temperature 30.0 270 < th dose independent rect. 19 18
528 191.31 temperature 30.0 30 < th dose independent rect. 9 19
536 191.35 precipitation 0.1 270 < th dose independent rect. 17 9
538 191.35 precipitation 0.1 270 < th dose dependent rect. 17 9
590 191.58 precipitation 0.1 270 < th dose independent rect. 9 1
592 191.58 precipitation 0.1 270 < th dose dependent rect. 9 1
603 191.68 radiation 20.0 270 < th dose independent rect. 1 6
606 191.71 atmosphere 995.0 270 > th dose independent rect. 9 1
607 191.71 atmosphere 1015.0 270 < th dose independent rect. 9 1
608 191.71 precipitation 0.1 270 < th dose independent rect. 8 3
613 191.71 temperature 10.0 270 > th dose independent rect. 10 23
614 191.71 precipitation 0.1 270 < th dose dependent rect. 8 3
628 191.75 temperature 30.0 270 < th dose independent rect. 18 8
641 191.80 atmosphere 995.0 270 > th dose independent rect. 8 3
642 191.80 atmosphere 1015.0 270 < th dose independent rect. 8 3
645 191.80 temperature 10.0 270 > th dose independent rect. 11 21
729 192.07 precipitation 0.1 270 < th dose independent rect. 7 18
730 192.07 precipitation 0.1 270 < th dose dependent rect. 7 18
731 192.08 wind 1.0 270 > th dose independent rect. 12 7
732 192.08 humidity 50.0 30 > th dose independent rect. 9 17
739 192.10 wind 9.0 270 < th dose dependent rect. 9 1
766 192.19 radiation 30.0 720 > th dose dependent rect. 12 22
775 192.23 precipitation 0.1 270 < th dose independent rect. 2 16
776 192.23 temperature 10.0 10 > th dose dependent rect. 9 6
778 192.23 precipitation 0.1 270 < th dose dependent rect. 2 16
780 192.26 wind 9.0 270 < th dose independent rect. 2 16
787 192.29 humidity 50.0 10 > th dose independent rect. 15 18
788 192.31 wind 1.0 270 > th dose independent rect. 8 3
820 192.41 wind 9.0 30 < th dose dependent rect. 9 6
821 192.42 humidity 50.0 270 > th dose independent rect. 9 1
831 192.45 wind 1.0 270 > th dose independent rect. 9 1
890 192.54 humidity 90.0 270 < th dose independent rect. 9 2
912 192.62 wind 9.0 270 < th dose dependent rect. 8 3
914 192.63 radiation 30.0 1440 > th dose dependent sin 13 NA
935 192.70 radiation 40.0 270 < th dose dependent rect. 1 7
938 192.71 radiation 40.0 270 < th dose dependent rect. 2 5
943 192.72 temperature 10.0 90 > th dose dependent rect. 13 20
952 192.77 atmosphere 1010.0 270 < th dose independent rect. 18 8
957 192.78 humidity 50.0 270 > th dose independent rect. 8 3
968 192.81 radiation 40.0 1440 < th dose independent rect. 13 21