Os08g0425700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Annexin-like protein.
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Os08g0425700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Annexin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 329.39 | 0.853 | 5.76 | -1.2 | 0.856 | 0.575 | -0.0494 | -4.63 | 0.11 | 2.02 | 24.2 | 761 | -- | -- |
| 366.1 | 0.891 | 5.85 | -2.19 | 0.813 | 0.99 | 0.138 | -- | -0.0179 | 2.87 | 22.7 | 11455 | -- | -- |
| 328.48 | 0.844 | 5.76 | -1.2 | 0.831 | 0.562 | -- | -4.39 | 0.116 | 2.1 | 24 | 723 | -- | -- |
| 331.07 | 0.847 | 5.88 | -1.33 | 0.844 | 1.6 | -- | -- | -0.0285 | 3.26 | 12 | 16473 | -- | -- |
| 366.03 | 0.891 | 5.77 | -1.24 | -- | 0.501 | -- | -4.05 | 0.11 | -- | 23.71 | 584 | -- | -- |
| 381.76 | 0.916 | 5.97 | -2.92 | 0.769 | -- | 0.43 | -- | -0.511 | 2.53 | -- | -- | -- | -- |
| 382.28 | 0.916 | 5.97 | -2.93 | 0.776 | -- | -- | -- | -0.515 | 2.78 | -- | -- | -- | -- |
| 366.09 | 0.891 | 5.87 | -1.37 | -- | 1.54 | -- | -- | -0.0571 | -- | 12.01 | 16404 | -- | -- |
| 352.04 | 0.874 | 5.83 | -- | 0.772 | 2.31 | -- | -- | 0.201 | 2.42 | 12.1 | 16503 | -- | -- |
| 417.24 | 0.954 | 5.97 | -2.9 | -- | -- | -- | -- | -0.495 | -- | -- | -- | -- | -- |
| 608.61 | 1.15 | 5.9 | -- | 0.719 | -- | -- | -- | -0.188 | 2.74 | -- | -- | -- | -- |
| 388 | 0.917 | 5.8 | -- | -- | 2.3 | -- | -- | 0.23 | -- | 12.06 | 16448 | -- | -- |
| 638.67 | 1.18 | 5.89 | -- | -- | -- | -- | -- | -0.173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 305.35 | radiation | 10 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 14 | 306.57 | humidity | 80 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 15 | 306.63 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 29 | 308.63 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 30 | 309.01 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 48 | 309.47 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 52 | 309.83 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 55 | 309.95 | radiation | 40 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 59 | 310.15 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 63 | 310.33 | radiation | 30 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 64 | 310.38 | radiation | 10 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 65 | 310.38 | radiation | 40 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 87 | 310.52 | radiation | 40 | 43200 | > th | dose independent | sin | 8 | NA |
| 107 | 310.55 | radiation | 1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 124 | 310.57 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 187 | 310.86 | radiation | 40 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 217 | 310.98 | radiation | 1 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 220 | 311.00 | radiation | 1 | 43200 | > th | dose dependent | rect. | 8 | 5 |
| 280 | 311.28 | radiation | 40 | 43200 | < th | dose dependent | rect. | 21 | 16 |
| 283 | 311.29 | radiation | 40 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 344 | 311.40 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 479 | 311.42 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 653 | 311.83 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 659 | 311.88 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 759 | 312.15 | radiation | 40 | 43200 | < th | dose dependent | sin | 7 | NA |
| 894 | 312.43 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 921 | 312.46 | radiation | 10 | 43200 | > th | dose dependent | sin | 7 | NA |
| 968 | 312.56 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 4 |