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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0425500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Inositol polyphosphate related phosphatase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.86 (0.0901) R2 : 0.854
β1 : -0.825 (0.43) R2dD : 0.00372 R2D : -0.00423
β2 : 7.76 (0.164) R2dC : 0.728 R2C : 0.696
β3 : -3.78 (0.565) R2dE : 0.0531 R2E : 0.00914
β4 : -2.32 (0.642) R2dD*C : 0.00423 R2D*C : -0.0166
β5 : -19.1 (1.34) R2dD*E : 0.139 R2D*E : 0.0158
γ1 : -0.314 (0.182) R2dN8 : 0.00205 R2N8 : -0.0242
σ : 1.27
deviance : 733.04
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_____
C
peak time of C : 10
E
wheather : radiation
threshold : 47.52
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
733.04 1.27 7.86 -0.825 7.76 -3.78 -2.32 -19.1 -0.314 10 47.52 4320 18 2
873.45 1.38 7.26 -1.38 7.62 -3.05 -1.75 -- -0.163 10 77.27 47520 18.7 1.31
753.39 1.28 7.86 -0.804 7.79 -3.97 -- -19.5 -0.296 10 45.07 4320 18 2
872.72 1.38 7.13 -1.79 7.8 -2.7 -- -- -0.135 10 52.78 47520 18.7 1.3
3218.4 2.64 7.69 -0.546 -- -6.39 -- -18.8 0.606 -- 152.1 20743 17.2 2.17
1055.44 1.52 7.1 -2.56 7.88 -- -2.3 -- 0.0617 9.84 -- -- -- --
1075.74 1.54 7.11 -2.65 7.89 -- -- -- 0.0569 9.83 -- -- -- --
1242.27 1.64 7.54 -0.321 -- -9.13 -- -- -1.18 -- 227 20779 14.9 4.85
963.94 1.45 7.12 -- 7.74 -3.46 -- -- 0.035 9.94 78.24 47520 18.5 3.08
4799.48 3.24 7.32 -2.74 -- -- -- -- 0.0612 -- -- -- -- --
1261.24 1.66 7.04 -- 7.9 -- -- -- 0.352 9.85 -- -- -- --
1145.88 1.58 7.41 -- -- -9.08 -- -- -0.747 -- 360.7 20842 14.9 3.51
4996.81 3.3 7.25 -- -- -- -- -- 0.365 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 705.04 wind 5 43200 < th dose independent rect. 11 1
2 705.70 wind 5 43200 > th dose independent rect. 11 1
3 713.39 radiation 20 14400 > th dose dependent rect. 16 15
5 716.09 humidity 90 43200 > th dose dependent rect. 20 1
6 716.33 radiation 20 14400 > th dose dependent rect. 16 1
20 716.58 humidity 70 14400 > th dose independent rect. 19 12
21 717.18 humidity 90 43200 > th dose dependent rect. 20 3
23 718.16 humidity 70 14400 > th dose independent rect. 19 1
26 719.34 humidity 90 43200 < th dose independent rect. 21 1
27 719.41 humidity 90 43200 > th dose dependent rect. 22 1
30 719.99 wind 3 43200 > th dose dependent rect. 11 1
32 720.24 temperature 30 14400 < th dose independent rect. 15 3
33 720.27 temperature 30 14400 > th dose independent rect. 15 2
34 720.32 humidity 90 43200 > th dose independent rect. 21 1
41 721.08 humidity 70 14400 > th dose independent rect. 19 3
44 721.18 humidity 70 14400 > th dose independent rect. 19 10
45 721.21 temperature 30 14400 < th dose independent rect. 14 15
46 721.26 temperature 30 14400 < th dose independent rect. 14 8
122 722.11 humidity 80 43200 > th dose independent rect. 12 2
165 722.80 temperature 30 14400 < th dose independent sin 15 NA
166 722.82 temperature 25 14400 > th dose dependent rect. 15 12
197 723.35 temperature 25 14400 > th dose dependent sin 14 NA
208 723.75 temperature 30 14400 > th dose independent sin 15 NA
307 726.26 humidity 90 43200 < th dose independent rect. 18 16
328 726.79 humidity 90 43200 < th dose independent sin 14 NA
338 726.91 humidity 80 43200 < th dose independent rect. 13 1
347 727.16 humidity 90 43200 < th dose independent rect. 15 13
399 727.68 humidity 90 43200 < th dose independent rect. 13 15
405 727.76 radiation 40 14400 < th dose dependent rect. 18 2
423 727.91 humidity 90 43200 < th dose independent rect. 9 20
433 727.97 humidity 90 43200 < th dose independent rect. 11 18
527 728.87 radiation 40 14400 < th dose dependent rect. 18 4
548 729.05 humidity 90 43200 < th dose independent rect. 18 21
549 729.05 temperature 25 14400 > th dose dependent no NA NA
552 729.06 humidity 90 43200 > th dose independent rect. 18 4
556 729.07 temperature 25 14400 > th dose dependent rect. 5 23
579 729.19 humidity 90 43200 > th dose dependent sin 17 NA
599 729.31 radiation 30 14400 < th dose independent rect. 15 16
631 729.55 radiation 30 14400 < th dose independent rect. 15 5
647 729.69 temperature 25 14400 > th dose dependent rect. 22 23
664 729.84 radiation 30 14400 < th dose independent rect. 15 14
758 730.66 humidity 90 43200 < th dose independent rect. 10 1
762 730.69 humidity 90 43200 > th dose independent sin 15 NA
779 730.94 temperature 30 14400 < th dose independent rect. 2 16
785 730.96 temperature 30 14400 < th dose independent rect. 19 23
825 731.26 humidity 90 43200 > th dose independent rect. 9 2
837 731.29 temperature 30 14400 < th dose independent rect. 2 19
880 731.34 temperature 30 14400 < th dose independent no NA NA
901 731.35 humidity 90 43200 < th dose independent rect. 24 23
989 731.67 humidity 90 43200 > th dose independent rect. 18 16
995 731.69 humidity 90 43200 > th dose independent rect. 9 20