Os08g0424600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os08g0424600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.18 | 0.456 | 6.68 | 0.0634 | 0.266 | -1.68 | 0.324 | -0.968 | -0.108 | 3.4 | 29.5 | 12 | -- | -- |
| 95.37 | 0.455 | 6.7 | -0.0821 | 0.238 | -1.66 | 0.115 | -- | -0.143 | 2.88 | 29.6 | 19 | -- | -- |
| 94.4 | 0.453 | 6.69 | 0.0191 | 0.261 | -1.66 | -- | -0.727 | -0.119 | 3.62 | 29.51 | 12 | -- | -- |
| 95.11 | 0.454 | 6.7 | -0.102 | 0.257 | -1.66 | -- | -- | -0.15 | 3.79 | 29.6 | 19 | -- | -- |
| 96.82 | 0.458 | 6.68 | 0.0999 | -- | -1.45 | -- | -0.866 | -0.0866 | -- | 27.97 | 19 | -- | -- |
| 132.27 | 0.539 | 6.62 | 0.294 | 0.337 | -- | 0.151 | -- | 0.184 | 13.2 | -- | -- | -- | -- |
| 132.36 | 0.539 | 6.62 | 0.3 | 0.337 | -- | -- | -- | 0.185 | 13.2 | -- | -- | -- | -- |
| 97.65 | 0.46 | 6.69 | -0.0381 | -- | -1.43 | -- | -- | -0.0986 | -- | 29.5 | 12 | -- | -- |
| 95.36 | 0.455 | 6.69 | -- | 0.247 | -1.63 | -- | -- | -0.131 | 3.84 | 29.6 | 19 | -- | -- |
| 139.38 | 0.552 | 6.63 | 0.287 | -- | -- | -- | -- | 0.178 | -- | -- | -- | -- | -- |
| 134.73 | 0.543 | 6.63 | -- | 0.332 | -- | -- | -- | 0.151 | 13.1 | -- | -- | -- | -- |
| 97.69 | 0.46 | 6.69 | -- | -- | -1.42 | -- | -- | -0.0925 | -- | 29.5 | 12 | -- | -- |
| 141.55 | 0.555 | 6.64 | -- | -- | -- | -- | -- | 0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 3 | 93.48 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 5 | 93.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 7 | 93.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 21 |
| 12 | 94.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 13 | 94.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 14 | 94.24 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 15 | 94.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 18 | 94.36 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 22 | 94.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 24 | 94.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 28 | 94.64 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 65 | 96.28 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 83 | 96.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 88 | 96.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 91 | 97.00 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 99 | 97.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 101 | 97.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 115 | 97.59 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 170 | 98.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 191 | 98.64 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 201 | 98.77 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 217 | 98.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 15 |
| 255 | 99.26 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 259 | 99.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 264 | 99.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 270 | 99.36 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 308 | 99.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 355 | 99.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 385 | 99.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 452 | 100.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 526 | 100.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 561 | 100.60 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 562 | 100.60 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 577 | 100.65 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 586 | 100.68 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 619 | 100.74 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 631 | 100.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 725 | 100.91 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 860 | 101.11 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 870 | 101.12 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 914 | 101.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 974 | 101.26 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 982 | 101.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |