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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0423700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.3 (0.0351) R2 : 0.29
β1 : 0.697 (0.126) R2dD : 0.0497 R2D : 0.0109
β2 : 0.638 (0.0849) R2dC : 0.0893 R2C : 0.103
β3 : 1.23 (0.166) R2dE : 0.101 R2E : 0.132
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.272 (0.0787) R2dN8 : 0.0285 R2N8 : 0.0448
σ : 0.643
deviance : 190.31
__
_____
C
peak time of C : 9.43
E
wheather : atmosphere
threshold : 1005
memory length : 61
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
185.95 0.641 4.3 0.713 0.628 1.23 0.802 -1.29 0.267 9.44 1005 90 -- --
188.51 0.639 4.3 0.669 0.646 1.24 0.724 -- 0.265 9.48 1005 61 -- --
188.24 0.639 4.3 0.733 0.63 1.22 -- -1.17 0.266 9.38 1005 76 -- --
190.31 0.643 4.3 0.697 0.638 1.23 -- -- 0.272 9.43 1005 61 -- --
210.84 0.676 4.32 0.739 -- 1.35 -- -1.25 0.249 -- 1005 110 -- --
211.92 0.682 4.25 0.639 0.717 -- 0.605 -- 0.482 9.28 -- -- -- --
213.23 0.684 4.25 0.661 0.716 -- -- -- 0.483 9.24 -- -- -- --
213.32 0.68 4.33 0.707 -- 1.39 -- -- 0.249 -- 1005 114 -- --
203.09 0.664 4.32 -- 0.641 1.2 -- -- 0.199 9.37 1005 46 -- --
243.01 0.728 4.27 0.658 -- -- -- -- 0.486 -- -- -- -- --
224.73 0.701 4.27 -- 0.716 -- -- -- 0.409 9.17 -- -- -- --
226.52 0.701 4.34 -- -- 1.34 -- -- 0.178 -- 1005 103 -- --
254.42 0.745 4.29 -- -- -- -- -- 0.413 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 177.32 temperature 15.0 270 > th dose independent rect. 24 15
2 178.02 atmosphere 1015.0 90 < th dose dependent rect. 12 17
4 179.81 atmosphere 1005.0 30 > th dose dependent rect. 6 20
9 180.07 wind 7.0 270 < th dose independent rect. 24 15
14 180.43 temperature 10.0 270 > th dose dependent rect. 24 16
20 180.71 atmosphere 995.0 90 > th dose dependent rect. 5 21
22 180.75 temperature 10.0 90 > th dose dependent rect. 12 17
31 181.03 temperature 10.0 270 > th dose dependent rect. 24 18
38 181.24 temperature 10.0 270 > th dose dependent rect. 23 21
61 182.20 temperature 30.0 270 < th dose dependent rect. 5 19
67 182.27 atmosphere 1005.0 90 > th dose dependent rect. 16 20
75 182.44 atmosphere 1005.0 10 > th dose dependent rect. 9 17
79 182.54 atmosphere 995.0 270 > th dose dependent rect. 15 9
122 183.27 temperature 10.0 270 > th dose dependent rect. 9 22
128 183.35 atmosphere 1010.0 90 < th dose independent rect. 1 17
151 183.67 temperature 30.0 270 < th dose independent rect. 15 9
169 183.93 temperature 10.0 10 > th dose dependent rect. 12 19
171 183.94 atmosphere 1015.0 270 < th dose dependent rect. 10 19
175 183.98 temperature 10.0 10 > th dose dependent rect. 1 21
196 184.18 atmosphere 1010.0 90 < th dose independent rect. 1 20
203 184.21 humidity 50.0 270 > th dose independent rect. 15 9
220 184.35 atmosphere 995.0 90 > th dose dependent rect. 9 16
247 184.63 atmosphere 1015.0 90 < th dose independent rect. 12 17
259 184.67 temperature 10.0 90 > th dose dependent rect. 11 23
293 184.92 wind 9.0 270 < th dose dependent rect. 24 15
307 185.05 atmosphere 1010.0 10 < th dose independent rect. 1 21
310 185.05 atmosphere 1015.0 10 < th dose dependent rect. 1 21
341 185.31 atmosphere 995.0 270 > th dose independent rect. 15 9
376 185.52 atmosphere 995.0 90 > th dose dependent rect. 5 7
382 185.55 temperature 30.0 90 < th dose independent rect. 5 7
384 185.57 atmosphere 1005.0 90 > th dose dependent rect. 21 23
387 185.58 atmosphere 1005.0 30 > th dose dependent rect. 18 23
392 185.60 atmosphere 1005.0 270 > th dose independent rect. 16 8
394 185.63 temperature 30.0 90 < th dose dependent rect. 9 16
428 185.83 atmosphere 1005.0 90 > th dose dependent rect. 21 15
441 185.92 atmosphere 1015.0 90 < th dose dependent rect. 11 22
456 185.97 temperature 30.0 10 < th dose dependent rect. 7 19
458 185.98 atmosphere 1005.0 90 > th dose dependent no NA NA
480 186.09 atmosphere 995.0 10 > th dose dependent rect. 18 8
487 186.12 wind 9.0 43200 > th dose dependent rect. 14 19
490 186.14 atmosphere 995.0 10 > th dose dependent rect. 16 10
494 186.15 precipitation 0.1 270 < th dose independent rect. 24 15
496 186.15 precipitation 0.1 270 < th dose dependent rect. 24 15
504 186.17 atmosphere 1005.0 90 > th dose dependent rect. 9 23
551 186.47 wind 1.0 10 > th dose dependent rect. 22 14
557 186.50 wind 9.0 270 < th dose independent rect. 15 9
558 186.51 atmosphere 995.0 90 > th dose dependent rect. 21 15
564 186.55 precipitation 0.1 90 < th dose independent rect. 12 17
565 186.55 precipitation 0.1 90 < th dose dependent rect. 12 17
566 186.55 temperature 30.0 270 < th dose dependent rect. 16 20
587 186.63 humidity 50.0 270 > th dose independent rect. 24 15
589 186.65 temperature 20.0 90 > th dose independent rect. 12 17
625 186.82 temperature 10.0 90 > th dose independent rect. 5 7
626 186.82 atmosphere 995.0 90 > th dose independent rect. 5 7
627 186.82 atmosphere 1015.0 90 < th dose independent rect. 5 7
628 186.82 temperature 10.0 90 > th dose independent rect. 12 17
632 186.83 wind 1.0 270 > th dose independent rect. 15 9
648 186.88 atmosphere 1015.0 10 < th dose dependent rect. 12 22
676 186.98 wind 9.0 43200 > th dose dependent rect. 16 23
679 187.01 precipitation 0.1 90 < th dose independent rect. 5 7
680 187.01 precipitation 0.1 90 < th dose dependent rect. 5 7
691 187.06 wind 1.0 90 > th dose dependent rect. 22 14
698 187.10 wind 1.0 90 > th dose independent rect. 5 7
704 187.12 atmosphere 1005.0 30 > th dose dependent sin 18 NA
716 187.17 radiation 30.0 270 < th dose independent rect. 15 9
734 187.24 temperature 10.0 270 > th dose independent rect. 15 9
736 187.24 temperature 15.0 90 > th dose independent rect. 1 20
747 187.28 wind 9.0 43200 > th dose dependent rect. 13 23
760 187.35 humidity 50.0 90 > th dose independent rect. 5 7
777 187.42 temperature 30.0 270 < th dose independent rect. 5 19
780 187.44 wind 9.0 43200 > th dose dependent sin 12 NA
782 187.44 wind 9.0 43200 > th dose dependent rect. 8 15
824 187.49 wind 9.0 43200 > th dose dependent rect. 22 23
844 187.52 wind 9.0 43200 > th dose dependent rect. 24 23
845 187.53 wind 7.0 10 < th dose independent rect. 1 17
850 187.53 wind 9.0 43200 > th dose dependent rect. 24 21
860 187.55 wind 9.0 43200 > th dose dependent no NA NA
887 187.61 wind 9.0 43200 > th dose dependent rect. 10 23
888 187.61 wind 9.0 43200 > th dose dependent rect. 20 23
891 187.62 atmosphere 1015.0 90 < th dose dependent rect. 1 17
941 187.81 precipitation 0.1 270 < th dose independent rect. 15 9
942 187.81 precipitation 0.1 270 < th dose dependent rect. 15 9
946 187.85 wind 9.0 90 < th dose independent rect. 12 17
972 187.94 wind 9.0 43200 > th dose independent rect. 14 21