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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0422500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.57 (0.0327) R2 : 0.186
β1 : 0.923 (0.126) R2dD : 0.113 R2D : 0.00882
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.36 (0.149) R2dE : 0.182 R2E : 0.0613
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.25 (0.0732) R2dN8 : 0.0313 R2N8 : -0.0316
σ : 0.603
deviance : 167.73
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 39.59
memory length : 985
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
158.38 0.591 3.53 1.05 0.884 1.35 0.428 -1.19 0.332 13.6 30.5 11 -- --
159.76 0.593 3.56 0.836 0.898 1.35 0.798 -- 0.277 13.6 30.47 10 -- --
158.89 0.587 3.52 1.12 0.871 1.31 -- -1.59 0.353 13.5 30.4 11 -- --
161.9 0.593 3.55 0.862 0.846 1.29 -- -- 0.311 13.5 27.78 10 -- --
190 0.642 3.56 0.96 -- 0.574 -- -2.32 0.182 -- 43.87 63 -- --
183.91 0.636 3.61 0.529 0.457 -- 0.614 -- 0.0276 13.1 -- -- -- --
185.47 0.638 3.61 0.55 0.456 -- -- -- 0.0307 12.9 -- -- -- --
167.73 0.603 3.57 0.923 -- 1.36 -- -- 0.25 -- 39.59 985 -- --
179.4 0.627 3.58 -- 0.727 0.941 -- -- 0.146 13.3 27.78 10 -- --
198.42 0.658 3.62 0.533 -- -- -- -- 0.022 -- -- -- -- --
193.46 0.651 3.62 -- 0.447 -- -- -- -0.0306 12.9 -- -- -- --
187.56 0.638 3.6 -- -- 1 -- -- 0.0955 -- 54.21 947 -- --
205.92 0.67 3.63 -- -- -- -- -- -0.0372 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 144.41 temperature 10 10 > th dose dependent rect. 3 23
24 154.56 temperature 10 720 > th dose dependent rect. 18 21
91 157.80 temperature 10 1440 > th dose dependent rect. 5 4
94 157.83 temperature 30 10 < th dose dependent rect. 16 21
97 157.86 temperature 30 1440 < th dose dependent rect. 5 4
106 158.04 temperature 30 1440 < th dose dependent rect. 8 1
115 158.08 temperature 30 10 < th dose dependent rect. 5 23
120 158.11 temperature 30 10 < th dose dependent rect. 14 23
126 158.15 temperature 30 10 < th dose dependent rect. 7 23
135 158.24 temperature 10 720 > th dose dependent rect. 3 12
138 158.24 temperature 30 10 < th dose dependent rect. 19 23
168 158.46 temperature 30 10 < th dose dependent no NA NA
173 158.47 temperature 30 10 < th dose dependent rect. 1 23
176 158.49 temperature 30 10 < th dose dependent rect. 9 23
180 158.51 temperature 30 10 < th dose dependent rect. 11 23
192 158.68 temperature 10 270 > th dose dependent no NA NA
207 158.76 temperature 15 270 > th dose dependent rect. 11 23
228 158.92 temperature 30 10 < th dose dependent rect. 21 23
239 158.98 temperature 30 10 < th dose dependent rect. 23 23
243 159.01 temperature 10 10 > th dose dependent no NA NA
264 159.08 temperature 30 270 < th dose dependent rect. 21 23
345 159.48 temperature 30 10 < th dose dependent rect. 7 21
363 159.54 temperature 15 1440 > th dose dependent rect. 21 14
394 159.65 temperature 15 1440 > th dose dependent sin 6 NA
408 159.67 temperature 30 1440 < th dose dependent rect. 21 13
479 159.83 temperature 30 270 < th dose dependent no NA NA
553 159.96 temperature 30 720 < th dose dependent rect. 24 23
605 160.07 temperature 30 1440 < th dose dependent sin 7 NA
657 160.19 temperature 20 90 > th dose independent rect. 3 22
678 160.24 temperature 10 1440 > th dose dependent rect. 22 1
732 160.34 radiation 30 4320 < th dose independent rect. 2 6
751 160.37 temperature 30 1440 < th dose dependent rect. 22 1
761 160.39 radiation 30 4320 < th dose independent rect. 18 14
793 160.47 radiation 30 4320 < th dose independent rect. 7 1
794 160.47 radiation 30 4320 < th dose independent rect. 20 12
886 160.64 radiation 30 4320 < th dose independent rect. 22 10
893 160.65 temperature 30 10 < th dose dependent rect. 9 19