FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0421800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Mitogen-activated protein kinase kinase kinase 1 (EC 2.7.1.-) (Arabidospsis NPK1-related protein kinase 1). Splice isoform 1S.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.23 (0.0254) R2 : 0.125
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.431 (0.0534) R2dN8 : 0.161 R2N8 : 0.125
σ : 0.478
deviance : 104.76
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
100.7 0.471 3.21 -0.00933 0.154 0.246 -0.195 -2.2 0.421 1.02 1.1 212 -- --
102.23 0.475 3.23 -0.00195 0.208 0.125 -0.0433 -- 0.418 1.36 2.2 146 -- --
100.83 0.468 3.21 -0.00543 0.154 0.226 -- -2.09 0.423 0.478 1.063 212 -- --
102.23 0.474 3.23 -0.000205 0.209 0.126 -- -- 0.419 1.36 2.2 146 -- --
102.31 0.471 3.21 -0.0053 -- 0.187 -- -2.14 0.428 -- 1.066 212 -- --
103.06 0.476 3.23 -0.0537 0.16 -- -0.0683 -- 0.424 23.7 -- -- -- --
103.08 0.475 3.23 -0.0509 0.161 -- -- -- 0.424 23.7 -- -- -- --
104.43 0.476 3.23 -0.0203 -- 0.091 -- -- 0.422 -- 2.3 530 -- --
102.23 0.473 3.23 -- 0.209 0.126 -- -- 0.419 1.36 2.2 146 -- --
104.71 0.478 3.23 -0.0463 -- -- -- -- 0.426 -- -- -- -- --
103.15 0.475 3.23 -- 0.16 -- -- -- 0.43 23.7 -- -- -- --
104.43 0.476 3.23 -- -- 0.0915 -- -- 0.423 -- 2.4 521 -- --
104.76 0.478 3.23 -- -- -- -- -- 0.431 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.10 radiation 1.0 30 < th dose dependent rect. 6 8
7 93.23 radiation 1.0 90 < th dose independent rect. 7 7
28 94.62 radiation 1.0 30 < th dose dependent rect. 6 2
40 94.82 precipitation 0.1 90 > th dose independent rect. 6 5
43 94.82 precipitation 0.1 90 > th dose dependent rect. 6 5
46 94.84 radiation 1.0 10 < th dose independent rect. 6 2
67 94.96 precipitation 0.1 10 > th dose independent rect. 5 3
83 94.96 precipitation 0.1 10 > th dose dependent rect. 5 3
99 94.99 precipitation 0.1 90 > th dose independent rect. 7 1
109 94.99 precipitation 0.1 90 > th dose dependent rect. 7 1
185 96.57 temperature 10.0 90 > th dose dependent rect. 23 7
191 96.77 precipitation 0.1 10 > th dose independent rect. 7 1
228 96.77 precipitation 0.1 10 > th dose dependent rect. 7 1
266 97.07 atmosphere 1015.0 90 < th dose independent rect. 23 7
277 97.45 radiation 10.0 90 < th dose independent rect. 23 7
279 97.46 wind 1.0 90 > th dose independent rect. 23 7
282 97.53 radiation 10.0 30 > th dose independent rect. 6 3
297 97.57 wind 9.0 90 < th dose independent rect. 6 17
298 97.58 radiation 1.0 90 < th dose independent rect. 6 17
299 97.61 wind 5.0 90 < th dose independent rect. 18 15
304 97.64 radiation 20.0 90 < th dose dependent rect. 23 7
306 97.66 temperature 15.0 90 > th dose independent rect. 23 7
307 97.66 wind 1.0 90 > th dose independent rect. 6 17
312 97.71 atmosphere 1015.0 90 < th dose independent rect. 9 22
313 97.73 wind 9.0 90 < th dose independent rect. 23 7
315 97.73 temperature 30.0 90 < th dose independent rect. 23 7
316 97.73 humidity 50.0 90 > th dose independent rect. 23 7
319 97.73 atmosphere 995.0 90 > th dose independent rect. 23 7
323 97.73 temperature 10.0 90 > th dose independent rect. 6 17
337 97.86 precipitation 0.1 90 < th dose independent rect. 23 7
338 97.86 precipitation 0.1 90 < th dose dependent rect. 23 7
340 97.90 atmosphere 995.0 90 > th dose dependent rect. 18 15
344 97.94 atmosphere 1000.0 10 > th dose dependent rect. 7 2
351 97.97 precipitation 0.1 90 < th dose independent rect. 6 17
354 97.97 precipitation 0.1 90 < th dose dependent rect. 6 17
355 97.98 wind 5.0 90 < th dose independent rect. 7 2
360 98.02 radiation 1.0 30 > th dose dependent rect. 8 1
361 98.04 humidity 80.0 30 < th dose dependent rect. 8 1
365 98.06 humidity 80.0 10 < th dose independent rect. 8 1
367 98.07 wind 3.0 30 > th dose independent rect. 8 1
371 98.08 temperature 25.0 10 > th dose independent rect. 8 1
378 98.09 radiation 10.0 30 > th dose independent rect. 8 1
379 98.09 radiation 30.0 10 < th dose dependent rect. 7 2
394 98.17 radiation 1.0 90 > th dose independent rect. 9 21
396 98.18 temperature 10.0 1440 > th dose independent rect. 9 1
399 98.18 atmosphere 995.0 1440 > th dose independent rect. 9 1
402 98.18 atmosphere 1015.0 1440 < th dose independent rect. 9 1
405 98.18 temperature 10.0 1440 > th dose independent rect. 10 23
412 98.20 temperature 25.0 30 > th dose dependent rect. 8 1
413 98.20 radiation 1.0 90 < th dose dependent rect. 6 17
416 98.22 humidity 60.0 90 > th dose independent rect. 7 2
419 98.24 wind 5.0 10 < th dose independent rect. 7 2
428 98.26 temperature 10.0 90 > th dose independent rect. 7 2
431 98.26 atmosphere 995.0 90 > th dose independent rect. 7 2
432 98.26 atmosphere 1015.0 90 < th dose independent rect. 7 2
433 98.26 radiation 40.0 90 < th dose independent rect. 7 2
434 98.26 radiation 40.0 90 < th dose independent rect. 6 17
436 98.26 temperature 10.0 90 > th dose independent rect. 9 22
437 98.27 wind 7.0 270 < th dose independent rect. 4 17
438 98.27 atmosphere 995.0 90 > th dose independent rect. 6 17
439 98.28 atmosphere 1015.0 270 < th dose independent rect. 21 7
440 98.28 radiation 30.0 270 < th dose independent rect. 18 14
462 98.31 humidity 50.0 90 > th dose dependent rect. 7 2
464 98.31 radiation 40.0 30 < th dose dependent rect. 7 17
470 98.33 atmosphere 1005.0 10 > th dose independent rect. 7 2
471 98.33 atmosphere 1015.0 90 < th dose independent rect. 6 17
473 98.34 wind 7.0 10 < th dose independent rect. 7 17
479 98.35 wind 9.0 90 < th dose dependent rect. 7 2
486 98.38 precipitation 0.1 90 < th dose independent rect. 7 2
489 98.38 wind 7.0 270 < th dose independent rect. 3 20
492 98.38 precipitation 0.1 90 < th dose dependent rect. 7 2
510 98.41 radiation 20.0 10 < th dose dependent rect. 24 7
512 98.42 temperature 10.0 270 > th dose independent rect. 8 10
513 98.42 atmosphere 1015.0 270 < th dose independent rect. 8 10
514 98.42 radiation 1.0 90 > th dose independent rect. 9 10
518 98.42 temperature 10.0 270 > th dose independent rect. 18 14
519 98.42 humidity 50.0 270 > th dose independent rect. 18 14
532 98.43 temperature 30.0 30 < th dose independent rect. 8 1
541 98.43 precipitation 0.1 270 < th dose independent rect. 8 10
543 98.43 humidity 50.0 90 > th dose independent rect. 6 17
546 98.43 wind 1.0 30 > th dose dependent rect. 8 1
548 98.43 precipitation 0.1 270 < th dose dependent rect. 8 10
549 98.44 atmosphere 1015.0 270 < th dose independent rect. 9 19
551 98.44 radiation 40.0 90 < th dose dependent rect. 7 2
556 98.46 atmosphere 995.0 270 > th dose independent rect. 18 14
574 98.49 humidity 70.0 10 > th dose dependent rect. 8 1
579 98.51 wind 7.0 1440 < th dose independent rect. 23 1
585 98.52 humidity 80.0 10 < th dose independent rect. 22 11
592 98.54 radiation 20.0 10 < th dose independent rect. 7 17
596 98.54 atmosphere 1015.0 30 < th dose dependent rect. 8 1
655 98.59 humidity 80.0 10 < th dose independent rect. 5 4
703 98.64 wind 9.0 90 < th dose independent rect. 9 22
705 98.64 precipitation 0.1 90 < th dose independent rect. 9 22
708 98.64 precipitation 0.1 90 < th dose dependent rect. 9 22
712 98.65 temperature 15.0 10 > th dose independent rect. 24 7
720 98.66 wind 9.0 10 < th dose independent rect. 24 7
722 98.66 temperature 30.0 10 < th dose independent rect. 24 7
723 98.66 humidity 50.0 10 > th dose independent rect. 24 7
726 98.66 atmosphere 995.0 10 > th dose independent rect. 24 7
730 98.66 temperature 10.0 10 > th dose independent rect. 7 17
734 98.67 temperature 25.0 10 > th dose independent rect. 22 1
735 98.67 precipitation 0.1 90 < th dose independent rect. 19 14
738 98.67 precipitation 0.1 90 < th dose dependent rect. 19 14
742 98.68 atmosphere 1000.0 10 > th dose dependent rect. 17 7
762 98.70 temperature 25.0 90 > th dose dependent rect. 19 14
767 98.71 precipitation 0.1 10 < th dose independent rect. 7 17
769 98.71 radiation 40.0 14400 < th dose dependent rect. 23 1
774 98.71 precipitation 0.1 10 < th dose dependent rect. 7 17
776 98.72 atmosphere 1000.0 90 > th dose dependent rect. 22 1
778 98.72 atmosphere 1015.0 90 < th dose dependent rect. 23 7
782 98.73 atmosphere 1015.0 270 < th dose independent rect. 23 4
807 98.73 temperature 25.0 10 > th dose dependent rect. 19 14
810 98.74 atmosphere 995.0 90 > th dose independent rect. 9 22
838 98.77 atmosphere 995.0 90 > th dose dependent rect. 6 17
846 98.79 atmosphere 1005.0 10 > th dose independent rect. 17 7
853 98.79 humidity 50.0 90 > th dose dependent rect. 23 7
857 98.80 temperature 25.0 30 > th dose dependent rect. 22 1
868 98.82 radiation 40.0 270 < th dose independent rect. 4 19
871 98.83 atmosphere 1015.0 30 < th dose independent rect. 23 23
894 98.85 atmosphere 995.0 10 > th dose dependent rect. 7 17
897 98.86 temperature 10.0 1440 > th dose independent rect. 23 1
900 98.86 temperature 30.0 1440 < th dose independent rect. 23 1
904 98.86 humidity 50.0 1440 > th dose independent rect. 23 1
914 98.86 atmosphere 995.0 1440 > th dose independent rect. 23 1
915 98.86 radiation 1.0 1440 < th dose independent rect. 23 1
950 98.86 temperature 10.0 1440 > th dose independent rect. 24 23
953 98.86 radiation 1.0 1440 < th dose dependent rect. 23 1
976 98.88 radiation 40.0 270 < th dose independent rect. 4 5
978 98.88 temperature 30.0 90 < th dose independent rect. 19 14