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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0419100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0262) R2 : 0.0154
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.147 (0.0552) R2dN8 : 0.0199 R2N8 : 0.0154
σ : 0.493
deviance : 111.72
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
88.01 0.437 3.3 -2.48 0.0711 87.6 0.0542 -535 0.143 7.46 1000 10 17 1
99.22 0.468 2.93 -0.161 0.0711 2.47 0.0579 -- 0.143 7.47 1000 10 17 1
88.02 0.44 3.3 -2.48 0.0712 87.6 -- -535 0.142 7.38 1000 10 17 1
99.23 0.467 2.93 -0.16 0.0712 2.47 -- -- 0.142 7.38 1000 14 17 1.16
88.28 0.44 3.3 -2.48 -- 87.6 -- -535 0.143 -- 1000 11 17 1.25
111.19 0.494 2.94 -0.132 0.0236 -- -0.0993 -- 0.132 6.97 -- -- -- --
111.2 0.494 2.94 -0.133 0.0292 -- -- -- 0.132 9.63 -- -- -- --
99.5 0.467 2.94 -0.158 -- 2.43 -- -- 0.143 -- 1000 14 17 1.16
99.9 0.468 2.93 -- 0.0694 2.44 -- -- 0.16 7.54 1000 20 17.3 1.34
111.25 0.493 2.94 -0.133 -- -- -- -- 0.133 -- -- -- -- --
111.66 0.494 2.93 -- 0.0296 -- -- -- 0.147 9.97 -- -- -- --
100.16 0.468 2.93 -- -- 2.41 -- -- 0.161 -- 1000 14 17 1.16
111.72 0.493 2.93 -- -- -- -- -- 0.147 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 88.01 atmosphere 1000.0 10 < th dose independent rect. 17 1
11 88.01 atmosphere 1000.0 10 < th dose dependent rect. 17 1
74 100.21 radiation 10.0 90 < th dose dependent rect. 10 2
76 100.47 precipitation 0.1 1440 > th dose independent rect. 12 1
78 100.47 precipitation 0.1 1440 > th dose dependent rect. 12 1
84 101.04 wind 1.0 1440 > th dose independent rect. 17 1
85 101.09 wind 1.0 1440 < th dose independent rect. 17 1
86 101.10 temperature 30.0 90 > th dose independent rect. 16 1
88 101.29 wind 1.0 1440 < th dose dependent rect. 17 1
96 102.58 radiation 10.0 90 < th dose independent rect. 10 2
137 105.03 wind 7.0 270 > th dose independent rect. 14 1
175 105.46 atmosphere 1000.0 10 > th dose independent rect. 3 23
201 106.07 radiation 10.0 90 < th dose independent rect. 10 17
212 106.27 atmosphere 1000.0 270 > th dose independent rect. 11 11
213 106.31 temperature 30.0 10 < th dose dependent rect. 2 1
215 106.35 wind 3.0 10 < th dose independent rect. 2 1
216 106.36 atmosphere 1015.0 10 < th dose dependent rect. 2 1
226 106.44 humidity 90.0 10 > th dose dependent rect. 2 1
227 106.45 wind 1.0 30 > th dose independent rect. 2 1
234 106.48 temperature 10.0 10 > th dose independent rect. 2 1
236 106.48 temperature 30.0 10 < th dose independent rect. 2 1
237 106.48 humidity 50.0 10 > th dose independent rect. 2 1
240 106.48 atmosphere 995.0 10 > th dose independent rect. 2 1
242 106.48 atmosphere 1010.0 10 < th dose independent rect. 2 1
244 106.48 radiation 1.0 10 < th dose independent rect. 2 1
249 106.48 precipitation 0.1 10 < th dose independent rect. 2 1
251 106.48 temperature 10.0 10 > th dose independent rect. 3 23
253 106.48 radiation 1.0 10 < th dose dependent rect. 2 1
258 106.48 precipitation 0.1 10 < th dose dependent rect. 2 1
261 106.51 wind 9.0 10 < th dose dependent rect. 2 1
262 106.51 humidity 50.0 10 > th dose dependent rect. 2 1
263 106.51 radiation 1.0 14400 < th dose dependent rect. 3 1
264 106.52 wind 9.0 1440 < th dose independent rect. 3 1
265 106.52 temperature 10.0 1440 > th dose independent rect. 3 1
268 106.52 temperature 30.0 1440 < th dose independent rect. 3 1
272 106.52 humidity 50.0 1440 > th dose independent rect. 3 1
281 106.52 atmosphere 995.0 1440 > th dose independent rect. 3 1
282 106.52 radiation 1.0 1440 < th dose independent rect. 3 1
304 106.52 temperature 10.0 1440 > th dose independent rect. 4 23
308 106.52 radiation 1.0 1440 < th dose dependent rect. 3 1
328 106.54 atmosphere 1000.0 270 < th dose independent sin 20 NA
334 106.57 atmosphere 995.0 10 > th dose dependent rect. 2 1
338 106.59 temperature 10.0 10 > th dose dependent rect. 2 1
344 106.62 atmosphere 1000.0 270 > th dose independent sin 20 NA
351 106.64 temperature 25.0 90 > th dose dependent rect. 1 1
352 106.65 humidity 90.0 10 > th dose independent rect. 2 1
380 106.69 radiation 10.0 4320 < th dose independent rect. 11 1
385 106.69 precipitation 0.1 10 < th dose independent rect. 3 23
392 106.69 precipitation 0.1 10 < th dose dependent rect. 3 23
408 106.74 radiation 30.0 90 < th dose dependent rect. 10 17
410 106.75 temperature 25.0 90 > th dose independent rect. 1 1
467 106.98 wind 9.0 14400 > th dose independent rect. 1 1
470 106.98 wind 9.0 14400 > th dose dependent rect. 1 1
474 106.99 wind 7.0 270 > th dose dependent rect. 14 1
617 107.42 wind 9.0 720 < th dose independent rect. 15 12
630 107.47 wind 3.0 10 < th dose independent rect. 12 1
648 107.55 wind 9.0 10 < th dose independent rect. 3 23
672 107.59 precipitation 0.1 720 < th dose independent rect. 15 12
675 107.59 precipitation 0.1 720 < th dose dependent rect. 15 12
679 107.60 humidity 60.0 1440 > th dose independent rect. 4 5
695 107.65 radiation 10.0 270 < th dose independent rect. 8 1
712 107.68 radiation 10.0 90 < th dose independent rect. 10 7
713 107.68 temperature 10.0 720 > th dose independent rect. 3 12
714 107.68 temperature 10.0 720 > th dose independent rect. 15 12
739 107.70 wind 7.0 720 < th dose independent rect. 6 6
761 107.76 atmosphere 1000.0 10 > th dose independent sin 18 NA
765 107.77 temperature 30.0 4320 < th dose independent rect. 13 1
769 107.77 radiation 40.0 720 < th dose independent rect. 15 12
787 107.80 humidity 80.0 720 > th dose independent rect. 3 4
819 107.83 wind 1.0 10 < th dose independent rect. 9 18
824 107.83 humidity 50.0 720 > th dose dependent rect. 3 4
828 107.84 atmosphere 995.0 720 > th dose independent rect. 3 12
829 107.84 precipitation 0.1 720 < th dose independent rect. 24 18
831 107.84 precipitation 0.1 720 < th dose dependent rect. 24 18
838 107.86 wind 9.0 720 < th dose independent rect. 15 3
839 107.86 atmosphere 1000.0 10 > th dose independent rect. 14 11
865 107.91 radiation 40.0 270 < th dose independent rect. 22 14
866 107.91 wind 9.0 720 < th dose independent rect. 24 18
867 107.91 radiation 40.0 270 < th dose independent rect. 7 20
879 107.93 temperature 25.0 270 > th dose independent rect. 23 4
882 107.93 precipitation 0.1 720 < th dose independent rect. 6 21
888 107.93 precipitation 0.1 720 < th dose dependent rect. 6 21
897 107.96 temperature 30.0 4320 > th dose independent rect. 13 1
900 107.97 humidity 60.0 1440 > th dose independent rect. 20 13
907 107.98 wind 9.0 720 < th dose independent rect. 6 21
924 108.01 humidity 60.0 1440 > th dose independent rect. 22 11
934 108.02 atmosphere 1000.0 270 > th dose independent rect. 3 19
941 108.03 temperature 25.0 270 > th dose dependent rect. 23 4
952 108.05 temperature 25.0 4320 > th dose independent rect. 22 3
953 108.05 precipitation 0.1 720 < th dose independent rect. 15 3
955 108.05 precipitation 0.1 720 < th dose dependent rect. 15 3
976 108.08 precipitation 0.1 720 < th dose independent rect. 6 6
981 108.08 precipitation 0.1 720 < th dose dependent rect. 6 6
983 108.09 temperature 25.0 4320 > th dose independent rect. 23 1
987 108.09 atmosphere 1015.0 720 < th dose independent rect. 3 12
996 108.10 wind 1.0 720 > th dose independent rect. 15 3