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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0417100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 2OG-Fe(II) oxygenase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.64 (0.0393) R2 : 0.401
β1 : 1.62 (0.143) R2dD : 0.18 R2D : 0.202
β2 : 1.38 (0.131) R2dC : 0.3 R2C : -0.0888
β3 : 1.09 (0.113) R2dE : 0.266 R2E : -0.079
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.198 (0.0863) R2dN8 : 0.0107 R2N8 : 0.0122
σ : 0.718
deviance : 237.34
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_____
C
peak time of C : 23.4
E
wheather : temperature
threshold : 20.49
memory length : 711
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.07
open length of G : 2.95

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
234.87 0.72 4.66 1.4 1.34 1.09 -0.439 -1.05 0.156 23.3 20.32 715 4 3.02
237.46 0.718 4.64 1.61 1.37 1.09 0.0072 -- 0.205 23.4 20.47 713 4.01 3.02
235.09 0.714 4.66 1.45 1.36 1.1 -- -0.845 0.162 23.3 20.4 713 4.01 3.01
237.34 0.718 4.64 1.62 1.38 1.09 -- -- 0.198 23.4 20.49 711 4.07 2.95
279.31 0.778 4.62 1.59 -- 0.483 -- -0.509 0.211 -- 22.75 1199 4.22 2.82
284.12 0.79 4.56 1.83 0.465 -- -0.473 -- 0.463 23.9 -- -- -- --
285.03 0.791 4.56 1.85 0.468 -- -- -- 0.466 23.6 -- -- -- --
280.52 0.78 4.6 1.76 -- 0.49 -- -- 0.242 -- 22.8 1199 4.67 2.37
304.78 0.813 4.68 -- 1.64 1.36 -- -- 0.0362 23.7 20.45 709 4.35 3.07
298.81 0.808 4.55 1.87 -- -- -- -- 0.471 -- -- -- -- --
375.71 0.907 4.61 -- 0.49 -- -- -- 0.259 23.8 -- -- -- --
339.24 0.858 4.67 -- -- 1.26 -- -- -0.0584 -- 20.42 1580 4.32 3.35
390.84 0.923 4.6 -- -- -- -- -- 0.264 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 236.05 temperature 15.0 720 > th dose dependent rect. 4 3
3 236.63 temperature 20.0 720 > th dose independent rect. 4 3
14 242.45 radiation 10.0 270 < th dose independent rect. 5 2
30 245.63 atmosphere 1005.0 30 > th dose independent rect. 9 21
31 245.68 humidity 50.0 720 > th dose dependent rect. 21 10
33 245.79 temperature 20.0 720 > th dose independent rect. 4 11
42 246.30 atmosphere 1005.0 30 > th dose independent rect. 11 19
48 246.91 radiation 10.0 270 < th dose dependent rect. 5 2
49 246.97 radiation 20.0 10 < th dose independent rect. 6 3
70 247.97 atmosphere 995.0 90 > th dose dependent rect. 9 20
72 248.04 humidity 80.0 270 > th dose dependent rect. 5 2
75 248.17 humidity 70.0 90 > th dose dependent rect. 5 5
79 248.36 humidity 80.0 270 > th dose independent rect. 4 3
92 248.73 wind 1.0 270 > th dose independent rect. 4 3
94 248.85 temperature 25.0 10 > th dose independent rect. 5 6
96 248.89 humidity 80.0 270 > th dose independent rect. 3 5
98 248.96 atmosphere 995.0 30 > th dose dependent rect. 11 18
100 249.06 humidity 80.0 90 > th dose independent rect. 5 5
108 249.24 humidity 50.0 720 > th dose dependent rect. 19 14
120 249.79 radiation 30.0 10 < th dose dependent rect. 6 3
124 249.88 atmosphere 995.0 10 > th dose dependent rect. 9 21
136 250.13 radiation 30.0 90 < th dose dependent rect. 5 4
137 250.15 humidity 70.0 270 > th dose dependent rect. 3 5
143 250.35 radiation 30.0 10 < th dose dependent rect. 6 5
188 251.26 temperature 25.0 720 < th dose dependent rect. 1 6
195 251.41 temperature 25.0 720 < th dose dependent rect. 24 14
211 251.61 temperature 15.0 30 > th dose dependent rect. 5 6
228 251.75 humidity 90.0 720 < th dose dependent rect. 20 13
243 251.89 temperature 20.0 720 < th dose independent rect. 24 15
256 252.03 wind 1.0 270 > th dose independent rect. 7 21
257 252.04 atmosphere 995.0 270 > th dose dependent rect. 7 21
259 252.06 temperature 20.0 720 < th dose independent rect. 1 8
260 252.07 temperature 25.0 720 < th dose dependent rect. 3 2
266 252.15 temperature 10.0 270 > th dose dependent rect. 3 19
275 252.21 temperature 20.0 720 < th dose independent rect. 4 1
279 252.24 atmosphere 1000.0 90 > th dose independent rect. 5 4
305 252.43 temperature 20.0 720 > th dose independent rect. 23 16
326 252.62 humidity 50.0 720 > th dose dependent rect. 19 5
331 252.63 humidity 90.0 720 < th dose dependent rect. 21 11
334 252.65 atmosphere 1005.0 270 > th dose dependent rect. 24 2
336 252.68 temperature 20.0 720 < th dose independent rect. 3 4
360 253.01 temperature 20.0 720 > th dose independent sin 4 NA
363 253.03 atmosphere 1005.0 90 > th dose dependent rect. 24 5
367 253.05 temperature 20.0 720 < th dose independent sin 5 NA
373 253.09 temperature 25.0 720 < th dose dependent sin 5 NA
378 253.10 temperature 25.0 270 < th dose independent rect. 7 7
390 253.17 humidity 70.0 720 > th dose dependent rect. 21 3
402 253.21 temperature 10.0 90 > th dose dependent rect. 5 17
431 253.39 temperature 10.0 720 > th dose dependent rect. 23 8
490 253.82 temperature 30.0 270 < th dose dependent rect. 7 9
555 254.33 humidity 70.0 10 > th dose dependent rect. 6 4
566 254.43 temperature 20.0 10 > th dose dependent rect. 6 3
578 254.54 temperature 30.0 90 < th dose dependent rect. 9 7
613 254.70 humidity 70.0 10 > th dose independent rect. 6 3
628 254.82 atmosphere 1005.0 10 > th dose dependent rect. 24 6
687 255.10 temperature 20.0 720 > th dose independent rect. 19 20
693 255.15 atmosphere 1000.0 30 > th dose independent rect. 5 6
694 255.16 temperature 10.0 1440 > th dose independent rect. 6 6
697 255.16 atmosphere 995.0 1440 > th dose independent rect. 6 6
698 255.16 temperature 10.0 1440 > th dose independent rect. 12 18
707 255.20 precipitation 0.1 270 < th dose independent rect. 7 21
709 255.20 precipitation 0.1 270 < th dose dependent rect. 7 21
712 255.22 temperature 30.0 90 < th dose independent rect. 9 20
717 255.23 precipitation 0.1 90 < th dose independent rect. 9 20
720 255.23 precipitation 0.1 90 < th dose dependent rect. 9 20
736 255.32 humidity 90.0 720 < th dose dependent rect. 22 3
746 255.36 wind 9.0 90 < th dose independent rect. 5 4
747 255.36 temperature 10.0 90 > th dose independent rect. 5 4
751 255.36 atmosphere 1015.0 90 < th dose independent rect. 5 4
753 255.36 temperature 10.0 90 > th dose independent rect. 9 20
758 255.39 humidity 50.0 4320 > th dose independent rect. 6 4
764 255.43 precipitation 0.1 90 < th dose independent rect. 5 4
765 255.43 precipitation 0.1 90 < th dose dependent rect. 5 4
798 255.60 temperature 30.0 270 < th dose independent rect. 4 3
805 255.60 temperature 10.0 270 > th dose independent rect. 7 21
825 255.71 humidity 90.0 720 < th dose independent rect. 22 14
835 255.76 atmosphere 1010.0 270 < th dose independent rect. 5 1
846 255.79 temperature 10.0 1440 > th dose independent rect. 6 4
849 255.79 atmosphere 995.0 1440 > th dose independent rect. 6 4
850 255.79 atmosphere 1015.0 1440 < th dose independent rect. 6 4
851 255.79 temperature 10.0 1440 > th dose independent rect. 10 20
854 255.80 temperature 30.0 10 < th dose independent rect. 11 18
882 255.97 wind 1.0 10 > th dose independent rect. 5 6
895 256.05 humidity 50.0 90 > th dose independent rect. 9 20
935 256.28 humidity 60.0 30 > th dose independent rect. 5 6
942 256.30 temperature 10.0 10 > th dose dependent rect. 6 16
968 256.42 atmosphere 1015.0 90 < th dose independent rect. 9 20