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Os08g0416800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.9 (0.0228) R2 : 0.529
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.35 (0.0595) R2dC : 0.529 R2C : 0.524
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0953 (0.0479) R2dN8 : 0.00527 R2N8 : 2.41e-06
σ : 0.429
deviance : 84.21
__
_____
C
peak time of C : 5.41
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.49 0.356 13.9 0.441 1.35 -0.835 0.0829 -2.04 0.0921 5.25 1.162 18608 -- --
63.29 0.371 13.9 0.691 1.25 -0.622 0.00839 -- 0.174 5.05 10.01 26843 -- --
57.1 0.352 13.9 0.443 1.35 -0.831 -- -2.1 0.0929 5.23 1.11 21329 -- --
62.02 0.367 13.9 0.782 1.32 -0.634 -- -- 0.194 5.39 10 27141 -- --
135.88 0.543 13.9 0.51 -- -0.531 -- -1.08 0.132 -- 3.406 12191 -- --
72.84 0.4 13.9 0.657 1.33 -- 0.0445 -- -0.0219 5.43 -- -- -- --
72.85 0.4 13.9 0.657 1.33 -- -- -- -0.0221 5.43 -- -- -- --
133.56 0.538 14 0.347 -- -1.08 -- -- 0.17 -- 2.5 12183 -- --
73.38 0.399 13.9 -- 1.32 -0.545 -- -- 0.11 5.34 46.14 20528 -- --
165.62 0.601 13.9 0.701 -- -- -- -- 0.0107 -- -- -- -- --
84.21 0.429 13.9 -- 1.35 -- -- -- -0.0953 5.41 -- -- -- --
126.08 0.523 14 -- -- -1.22 -- -- 0.173 -- 2.167 6418 -- --
178.6 0.624 14 -- -- -- -- -- -0.0671 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.39 wind 1.0 43200 > th dose independent rect. 21 2
7 56.07 wind 1.0 43200 < th dose independent rect. 20 3
11 56.26 wind 1.0 14400 > th dose independent rect. 11 1
14 56.34 humidity 80.0 43200 > th dose dependent rect. 21 1
15 56.35 wind 1.0 14400 < th dose dependent rect. 11 1
19 56.45 wind 1.0 14400 > th dose independent rect. 6 18
22 56.49 wind 1.0 43200 < th dose dependent rect. 20 3
27 56.62 wind 1.0 14400 < th dose independent rect. 11 1
30 56.66 humidity 70.0 43200 > th dose dependent rect. 18 1
33 56.70 humidity 80.0 43200 > th dose independent rect. 17 1
34 56.70 radiation 1.0 43200 < th dose independent rect. 17 1
35 56.71 humidity 80.0 43200 < th dose independent rect. 17 1
40 56.75 humidity 80.0 43200 > th dose independent rect. 17 4
43 56.76 radiation 1.0 43200 < th dose independent rect. 17 12
44 56.77 humidity 90.0 43200 < th dose independent rect. 21 1
62 56.81 radiation 1.0 43200 > th dose independent rect. 17 12
63 56.82 radiation 1.0 43200 > th dose independent rect. 17 2
75 56.83 humidity 90.0 43200 < th dose dependent rect. 18 1
105 56.89 humidity 80.0 43200 > th dose independent rect. 19 1
110 56.90 wind 1.0 14400 < th dose independent rect. 6 18
115 56.93 humidity 90.0 43200 > th dose independent rect. 5 1
122 56.97 wind 1.0 14400 < th dose independent rect. 10 3
126 56.98 radiation 1.0 4320 > th dose independent rect. 17 13
127 56.98 wind 3.0 43200 < th dose dependent rect. 23 1
136 57.01 humidity 50.0 43200 > th dose dependent rect. 21 1
157 57.03 humidity 90.0 43200 > th dose dependent rect. 5 1
174 57.07 radiation 1.0 43200 < th dose dependent rect. 17 2
176 57.07 radiation 1.0 43200 < th dose dependent rect. 17 5
184 57.09 radiation 1.0 43200 < th dose independent sin 15 NA
186 57.09 humidity 90.0 43200 < th dose independent rect. 1 5
212 57.13 radiation 1.0 43200 > th dose independent sin 15 NA
217 57.14 humidity 90.0 43200 < th dose independent rect. 5 1
221 57.15 humidity 90.0 43200 < th dose independent rect. 1 2
255 57.18 radiation 1.0 14400 < th dose dependent rect. 5 1
271 57.21 humidity 90.0 43200 < th dose independent rect. 21 9
275 57.21 precipitation 0.1 43200 < th dose independent rect. 17 11
281 57.21 precipitation 0.1 43200 < th dose dependent rect. 17 11
283 57.22 precipitation 0.1 43200 > th dose independent rect. 17 11
304 57.23 radiation 1.0 4320 < th dose independent rect. 17 13
313 57.23 wind 1.0 43200 < th dose dependent rect. 16 8
314 57.23 wind 3.0 14400 < th dose dependent rect. 5 19
317 57.24 humidity 90.0 43200 > th dose independent rect. 1 5
381 57.28 humidity 90.0 43200 > th dose independent rect. 1 2
395 57.28 radiation 1.0 4320 < th dose dependent rect. 17 13
398 57.29 precipitation 0.1 43200 > th dose independent rect. 20 8
399 57.29 precipitation 0.1 43200 < th dose independent rect. 20 8
404 57.29 precipitation 0.1 43200 < th dose dependent rect. 20 8
410 57.30 wind 1.0 14400 > th dose independent rect. 10 3
431 57.31 humidity 90.0 43200 < th dose independent rect. 17 13
437 57.31 humidity 90.0 43200 > th dose dependent rect. 23 1
444 57.31 humidity 60.0 43200 > th dose dependent rect. 17 10
456 57.32 radiation 1.0 14400 < th dose dependent rect. 22 8
464 57.33 precipitation 0.1 43200 > th dose independent rect. 22 2
476 57.33 precipitation 0.1 43200 > th dose dependent rect. 22 2
483 57.33 humidity 90.0 43200 > th dose dependent rect. 21 9
489 57.34 humidity 90.0 43200 > th dose independent rect. 21 9
512 57.36 precipitation 0.1 43200 > th dose independent rect. 20 11
516 57.36 temperature 25.0 43200 > th dose dependent rect. 17 2
527 57.37 humidity 90.0 43200 > th dose independent rect. 21 5
535 57.37 precipitation 0.1 43200 < th dose independent rect. 20 11
554 57.37 precipitation 0.1 43200 < th dose dependent rect. 20 11
559 57.38 precipitation 0.1 43200 < th dose independent rect. 22 2
578 57.38 temperature 10.0 43200 > th dose dependent rect. 18 1
581 57.38 precipitation 0.1 43200 < th dose dependent rect. 22 2
585 57.39 temperature 30.0 43200 < th dose independent rect. 15 1
612 57.40 temperature 30.0 43200 < th dose dependent rect. 18 1
618 57.41 precipitation 0.1 43200 > th dose independent sin 12 NA
619 57.41 precipitation 0.1 43200 < th dose independent sin 12 NA
630 57.41 precipitation 0.1 43200 < th dose dependent sin 12 NA
644 57.42 humidity 90.0 43200 > th dose independent rect. 21 3
693 57.44 precipitation 0.1 43200 > th dose dependent rect. 20 8
700 57.45 humidity 90.0 43200 < th dose independent sin 12 NA
711 57.45 precipitation 0.1 43200 > th dose dependent rect. 21 6
719 57.46 temperature 30.0 43200 > th dose independent rect. 15 1
767 57.47 humidity 80.0 43200 > th dose dependent sin 14 NA
807 57.48 precipitation 0.1 43200 > th dose dependent rect. 20 11
942 57.53 wind 3.0 14400 < th dose dependent rect. 6 11
946 57.54 radiation 1.0 14400 < th dose independent rect. 5 1
952 57.54 precipitation 0.1 43200 < th dose independent rect. 14 14
958 57.54 radiation 1.0 43200 < th dose dependent sin 15 NA
966 57.54 precipitation 0.1 43200 < th dose dependent rect. 14 14
980 57.55 precipitation 0.1 43200 > th dose independent rect. 14 14