Os08g0416400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os08g0416400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.71 | 0.234 | 11 | 0.299 | 0.524 | -0.108 | -0.156 | 2.05 | -0.0457 | 7.14 | 0.2891 | 4200 | -- | -- |
| 26.26 | 0.239 | 11.1 | 0.303 | 0.524 | 0.411 | -0.0313 | -- | -0.0325 | 7.22 | 0.5433 | 2205 | -- | -- |
| 24.75 | 0.232 | 11 | 0.373 | 0.517 | -0.304 | -- | 2.62 | -0.0485 | 7.18 | 0.4106 | 4202 | -- | -- |
| 25.9 | 0.237 | 11.1 | 0.204 | 0.524 | 0.5 | -- | -- | -0.0282 | 7.29 | 0.3258 | 2202 | -- | -- |
| 39.23 | 0.292 | 11 | 0.44 | -- | -0.461 | -- | 3.22 | -0.0347 | -- | 0.4425 | 3806 | -- | -- |
| 29.04 | 0.253 | 11.1 | 0.351 | 0.53 | -- | -0.118 | -- | -0.055 | 7.08 | -- | -- | -- | -- |
| 29.08 | 0.253 | 11.1 | 0.348 | 0.53 | -- | -- | -- | -0.0547 | 7.08 | -- | -- | -- | -- |
| 40.92 | 0.298 | 11.1 | 0.252 | -- | 0.433 | -- | -- | -0.0183 | -- | 0.1926 | 2377 | -- | -- |
| 26.84 | 0.241 | 11.1 | -- | 0.546 | 0.586 | -- | -- | -0.0452 | 7.2 | 0.03531 | 2122 | -- | -- |
| 43.87 | 0.309 | 11.1 | 0.359 | -- | -- | -- | -- | -0.0452 | -- | -- | -- | -- | -- |
| 32.28 | 0.266 | 11.1 | -- | 0.534 | -- | -- | -- | -0.0935 | 7.04 | -- | -- | -- | -- |
| 41.99 | 0.302 | 11.1 | -- | -- | 0.566 | -- | -- | -0.0328 | -- | -0.5193 | 2260 | -- | -- |
| 47.26 | 0.321 | 11.1 | -- | -- | -- | -- | -- | -0.085 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.23 | wind | 3.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 2 | 24.29 | wind | 1.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 3 | 24.34 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 4 | 24.34 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 6 | 24.38 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 7 | 24.39 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 8 | 24.39 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 9 | 24.39 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 8 |
| 10 | 24.39 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 11 | 24.39 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 5 |
| 12 | 24.39 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 8 |
| 14 | 24.40 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 15 | 24.40 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 8 |
| 19 | 24.41 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 18 |
| 22 | 24.43 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 29 | 24.45 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 14 |
| 30 | 24.45 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 14 |
| 33 | 24.45 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 11 | 6 |
| 34 | 24.45 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 14 |
| 55 | 24.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 57 | 24.49 | wind | 3.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 64 | 24.49 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 67 | 24.49 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 14 |
| 80 | 24.53 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 18 | NA |
| 81 | 24.53 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 18 | NA |
| 82 | 24.53 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 87 | 24.53 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 18 | NA |
| 89 | 24.53 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 91 | 24.53 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 8 | 9 |
| 97 | 24.54 | wind | 3.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 124 | 24.55 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 23 |
| 136 | 24.57 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 137 | 24.57 | wind | 1.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 173 | 24.60 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 174 | 24.60 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 182 | 24.60 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 188 | 24.61 | wind | 3.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 197 | 24.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 11 |
| 201 | 24.62 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 219 | 24.63 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 220 | 24.63 | wind | 3.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 226 | 24.63 | radiation | 1.0 | 720 | > th | dose independent | rect. | 16 | 14 |
| 229 | 24.63 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 6 |
| 235 | 24.63 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 239 | 24.64 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 246 | 24.64 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 4 |
| 252 | 24.65 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 253 | 24.65 | wind | 3.0 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 256 | 24.65 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 259 | 24.65 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 8 |
| 267 | 24.65 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 12 |
| 314 | 24.68 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 333 | 24.69 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 24 | 22 |
| 338 | 24.70 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 12 |
| 350 | 24.70 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 16 | NA |
| 390 | 24.72 | radiation | 1.0 | 720 | > th | dose independent | rect. | 16 | 3 |
| 432 | 24.73 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 441 | 24.73 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 458 | 24.74 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 24 | 20 |
| 470 | 24.74 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 24 | 20 |
| 474 | 24.74 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 22 |
| 475 | 24.74 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 23 |
| 485 | 24.75 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 20 |
| 490 | 24.75 | precipitation | 0.1 | 4320 | > th | dose dependent | no | NA | NA |
| 506 | 24.76 | wind | 3.0 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 537 | 24.77 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 566 | 24.77 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 20 |
| 614 | 24.80 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 668 | 24.82 | wind | 3.0 | 43200 | > th | dose independent | rect. | 24 | 7 |
| 698 | 24.83 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 15 |
| 699 | 24.83 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 15 |
| 710 | 24.83 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 15 |
| 715 | 24.83 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 4 | 18 |
| 765 | 24.85 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 3 | 11 |
| 767 | 24.85 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 15 |
| 792 | 24.86 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 804 | 24.86 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 18 |
| 833 | 24.88 | radiation | 1.0 | 720 | > th | dose independent | rect. | 16 | 21 |
| 841 | 24.88 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 858 | 24.89 | humidity | 80.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 891 | 24.90 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 15 |
| 905 | 24.90 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 15 |
| 920 | 24.91 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 0 | NA |
| 924 | 24.91 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 4 | 9 |
| 929 | 24.91 | radiation | 1.0 | 720 | > th | dose independent | rect. | 16 | 23 |
| 946 | 24.92 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 0 | NA |
| 947 | 24.92 | wind | 1.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 963 | 24.92 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 0 | NA |
| 986 | 24.93 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 2 | NA |