Os08g0414700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Trehalose-6-phosphate synthase (Fragment).
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Os08g0414700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Trehalose-6-phosphate synthase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 208.37 | 0.678 | 4.08 | -3.68 | 0.637 | -0.407 | 0.824 | 4.47 | -0.278 | 16.8 | 6.056 | 889 | -- | -- |
| 226.18 | 0.7 | 4.15 | -3.47 | 0.622 | -0.821 | 1.32 | -- | -0.301 | 16.5 | 8.5 | 2239 | -- | -- |
| 208.99 | 0.673 | 4.07 | -3.68 | 0.672 | -0.25 | -- | 5.13 | -0.243 | 17.3 | 8.2 | 995 | -- | -- |
| 226.89 | 0.702 | 4.18 | -3.48 | 0.67 | -0.959 | -- | -- | -0.364 | 17.4 | 12.11 | 2286 | -- | -- |
| 231.92 | 0.709 | 4.07 | -3.71 | -- | -0.322 | -- | 5.1 | -0.262 | -- | 7.5 | 903 | -- | -- |
| 233.49 | 0.716 | 4.16 | -3.69 | 0.684 | -- | 0.633 | -- | -0.305 | 17.4 | -- | -- | -- | -- |
| 233.91 | 0.716 | 4.17 | -3.7 | 0.697 | -- | -- | -- | -0.303 | 17.9 | -- | -- | -- | -- |
| 243.96 | 0.731 | 4.15 | -3.52 | -- | -0.811 | -- | -- | -0.319 | -- | 7.5 | 903 | -- | -- |
| 455.18 | 0.994 | 4.26 | -- | 0.879 | -2.74 | -- | -- | -0.736 | 16.7 | 12.55 | 5538 | -- | -- |
| 259.11 | 0.752 | 4.15 | -3.72 | -- | -- | -- | -- | -0.319 | -- | -- | -- | -- | -- |
| 594.29 | 1.14 | 4.07 | -- | 0.755 | -- | -- | -- | 0.109 | 17.7 | -- | -- | -- | -- |
| 479.05 | 1.02 | 4.21 | -- | -- | -3.01 | -- | -- | -0.57 | -- | 13.93 | 6225 | -- | -- |
| 623.86 | 1.17 | 4.06 | -- | -- | -- | -- | -- | 0.0936 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 194.78 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 1 |
| 2 | 197.45 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 13 | 202.42 | wind | 3 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 18 | 203.08 | wind | 5 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 19 | 203.11 | wind | 5 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 44 | 203.92 | wind | 9 | 1440 | < th | dose dependent | rect. | 14 | 5 |
| 65 | 204.38 | wind | 3 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 67 | 204.40 | wind | 5 | 720 | > th | dose independent | rect. | 17 | 1 |
| 72 | 204.53 | wind | 5 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 116 | 205.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 12 |
| 117 | 205.31 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 8 |
| 129 | 205.41 | wind | 5 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 139 | 205.46 | wind | 9 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 146 | 205.57 | wind | 9 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 177 | 205.93 | wind | 5 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 248 | 206.56 | wind | 5 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 278 | 206.86 | wind | 5 | 1440 | < th | dose independent | sin | 19 | NA |
| 287 | 206.89 | wind | 3 | 1440 | > th | dose dependent | sin | 19 | NA |
| 293 | 206.93 | wind | 5 | 1440 | > th | dose independent | sin | 19 | NA |
| 430 | 207.74 | wind | 7 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 433 | 207.76 | wind | 7 | 720 | < th | dose dependent | rect. | 14 | 16 |
| 435 | 207.79 | wind | 1 | 720 | > th | dose dependent | rect. | 14 | 15 |
| 490 | 208.04 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 15 |
| 508 | 208.09 | wind | 5 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 523 | 208.16 | wind | 7 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 578 | 208.30 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 579 | 208.30 | wind | 9 | 1440 | < th | dose dependent | sin | 19 | NA |
| 591 | 208.33 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 663 | 208.56 | wind | 5 | 30 | < th | dose dependent | rect. | 4 | 14 |
| 666 | 208.57 | wind | 3 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 675 | 208.59 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 680 | 208.59 | wind | 5 | 720 | < th | dose dependent | rect. | 9 | 21 |
| 725 | 208.70 | temperature | 25 | 10 | < th | dose independent | rect. | 12 | 21 |
| 734 | 208.71 | wind | 1 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 754 | 208.75 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 3 |
| 781 | 208.83 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 860 | 209.00 | radiation | 1 | 30 | < th | dose independent | rect. | 5 | 23 |
| 878 | 209.04 | wind | 5 | 720 | < th | dose dependent | rect. | 11 | 19 |
| 905 | 209.12 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 915 | 209.14 | wind | 1 | 720 | > th | dose dependent | sin | 15 | NA |
| 956 | 209.23 | radiation | 10 | 10 | < th | dose dependent | rect. | 7 | 21 |
| 960 | 209.24 | wind | 7 | 720 | < th | dose dependent | rect. | 13 | 21 |
| 962 | 209.25 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 2 |
| 982 | 209.27 | radiation | 1 | 30 | < th | dose dependent | rect. | 5 | 23 |