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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0414500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Helix-loop-helix DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.31 (0.0612) R2 : 0.68
β1 : -2.15 (0.225) R2dD : 0.0672 R2D : 0.0205
β2 : 2.55 (0.152) R2dC : 0.216 R2C : 0.345
β3 : 3.61 (0.191) R2dE : 0.275 R2E : 0.39
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.672 (0.131) R2dN8 : 0.0249 R2N8 : 0.00378
σ : 1.14
deviance : 604.31
__
_____
C
peak time of C : 0.528
E
wheather : wind
threshold : 2.309
memory length : 103
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.8
open length of G : 3.37

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
602.7 1.15 5.3 -2.06 2.57 3.53 -0.309 1.7 -0.651 0.56 2.3 101 1.87 3.31
604.41 1.15 5.31 -2.16 2.56 3.61 -0.115 -- -0.67 0.526 2.3 103 1.82 3.34
601.73 1.14 5.3 -2.05 2.55 3.53 -- 1.61 -0.648 0.531 2.36 103 1.81 3.37
604.31 1.14 5.31 -2.15 2.55 3.61 -- -- -0.672 0.528 2.309 103 1.8 3.37
933.9 1.42 5.28 -1.93 -- 3.84 -- 1.18 -0.649 -- 5.9 52 1.52 4
933.72 1.43 5.28 -1.88 3.8 -- 0.724 -- -0.689 2.26 -- -- -- --
935.66 1.43 5.29 -1.9 3.8 -- -- -- -0.693 2.25 -- -- -- --
934.64 1.42 5.25 -2.03 -- 3.97 -- -- -0.578 -- 6.099 48 1.55 4
726.43 1.26 5.29 -- 2.58 3.51 -- -- -0.466 0.537 2.305 107 1.78 3.4
1794.96 1.98 5.26 -1.74 -- -- -- -- -0.602 -- -- -- -- --
1031.05 1.5 5.24 -- 3.76 -- -- -- -0.482 2.24 -- -- -- --
1046.81 1.51 5.19 -- -- 3.88 -- -- -0.326 -- 6.886 49 1.55 4.02
1875.06 2.02 5.21 -- -- -- -- -- -0.408 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 607.99 temperature 15.0 270 > th dose dependent rect. 24 4
2 612.70 wind 3.0 90 < th dose dependent rect. 2 3
6 618.93 temperature 15.0 270 > th dose dependent rect. 1 2
19 627.15 wind 3.0 90 < th dose independent rect. 2 3
25 628.42 wind 9.0 90 < th dose independent rect. 5 22
26 628.70 temperature 15.0 10 > th dose dependent rect. 2 4
33 632.41 temperature 20.0 90 > th dose independent rect. 3 2
34 632.76 wind 3.0 270 < th dose independent rect. 24 4
35 633.22 precipitation 0.1 90 < th dose independent rect. 3 2
36 633.22 precipitation 0.1 90 < th dose dependent rect. 3 2
37 634.10 humidity 60.0 90 > th dose dependent rect. 3 2
60 640.47 temperature 10.0 90 > th dose independent rect. 3 2
62 640.47 temperature 30.0 90 < th dose independent rect. 3 2
63 640.47 humidity 50.0 90 > th dose independent rect. 3 2
66 640.47 atmosphere 995.0 90 > th dose independent rect. 3 2
67 640.47 atmosphere 1010.0 90 < th dose independent rect. 3 2
69 640.47 radiation 20.0 90 < th dose independent rect. 3 2
72 640.47 temperature 10.0 90 > th dose independent rect. 5 22
73 640.56 radiation 40.0 90 < th dose dependent rect. 3 2
77 640.79 radiation 1.0 90 < th dose independent rect. 3 2
89 642.36 atmosphere 1015.0 90 < th dose dependent rect. 3 2
97 644.46 wind 9.0 270 < th dose independent rect. 3 22
102 645.64 temperature 15.0 720 > th dose dependent rect. 17 2
108 647.36 temperature 20.0 10 > th dose independent rect. 2 4
110 647.72 wind 5.0 10 < th dose dependent rect. 2 4
118 649.57 wind 5.0 10 < th dose dependent rect. 24 6
120 649.81 temperature 25.0 720 > th dose dependent rect. 17 7
129 650.72 precipitation 0.1 270 < th dose independent rect. 24 4
130 650.72 precipitation 0.1 270 < th dose dependent rect. 24 4
132 650.93 temperature 25.0 720 > th dose dependent rect. 17 2
137 651.59 precipitation 0.1 90 < th dose independent rect. 5 22
138 651.59 precipitation 0.1 90 < th dose dependent rect. 5 22
178 654.19 temperature 20.0 270 > th dose independent rect. 24 4
212 656.49 temperature 10.0 270 > th dose independent rect. 3 22
218 656.58 wind 9.0 1440 < th dose independent rect. 3 3
219 656.58 temperature 10.0 1440 > th dose independent rect. 3 3
222 656.58 temperature 30.0 1440 < th dose independent rect. 3 3
226 656.58 humidity 50.0 1440 > th dose independent rect. 3 3
235 656.58 atmosphere 995.0 1440 > th dose independent rect. 3 3
236 656.58 radiation 20.0 1440 < th dose independent rect. 3 3
245 656.58 temperature 10.0 1440 > th dose independent rect. 6 21
256 657.57 atmosphere 1010.0 270 < th dose independent rect. 24 4
259 657.62 temperature 30.0 270 < th dose independent rect. 24 4
260 657.62 humidity 50.0 270 > th dose independent rect. 24 4
263 657.62 atmosphere 995.0 270 > th dose independent rect. 24 4
264 657.62 radiation 1.0 270 < th dose independent rect. 24 4
270 657.62 radiation 1.0 270 < th dose dependent rect. 24 4
285 659.45 humidity 50.0 270 > th dose dependent rect. 24 4
293 660.42 wind 9.0 10 < th dose independent rect. 6 20
311 662.54 temperature 10.0 90 > th dose dependent rect. 16 13
313 662.82 precipitation 0.1 10 < th dose independent rect. 2 4
314 662.82 precipitation 0.1 10 < th dose dependent rect. 2 4
319 663.31 radiation 30.0 90 < th dose independent rect. 15 14
322 663.53 radiation 1.0 270 < th dose independent rect. 5 19
324 663.62 radiation 1.0 270 < th dose dependent rect. 5 19
325 663.66 precipitation 0.1 270 < th dose independent rect. 14 14
326 663.66 precipitation 0.1 270 < th dose dependent rect. 14 14
331 664.36 wind 3.0 10 < th dose independent rect. 2 4
361 665.39 temperature 10.0 270 > th dose dependent rect. 13 15
379 667.21 humidity 50.0 10 > th dose dependent rect. 2 4
386 667.77 humidity 50.0 270 > th dose independent rect. 4 20
389 667.80 radiation 10.0 10 < th dose independent rect. 2 4
393 668.12 radiation 40.0 90 < th dose dependent rect. 15 14
401 669.08 radiation 40.0 10 < th dose dependent rect. 2 4
403 669.13 wind 9.0 270 < th dose independent rect. 4 10
407 669.35 precipitation 0.1 90 < th dose independent rect. 5 10
408 669.35 precipitation 0.1 90 < th dose dependent rect. 5 10
409 669.37 wind 7.0 10 < th dose independent rect. 2 4
416 670.07 temperature 10.0 10 > th dose dependent rect. 16 14
424 670.50 wind 1.0 270 > th dose independent rect. 24 4
431 671.06 temperature 10.0 90 > th dose independent rect. 5 10
432 671.06 atmosphere 1015.0 90 < th dose independent rect. 5 10
433 671.06 temperature 10.0 90 > th dose independent rect. 15 14
435 671.13 temperature 10.0 10 > th dose independent rect. 2 4
437 671.13 temperature 30.0 10 < th dose independent rect. 2 4
438 671.13 humidity 50.0 10 > th dose independent rect. 2 4
441 671.13 atmosphere 995.0 10 > th dose independent rect. 2 4
442 671.13 atmosphere 1010.0 10 < th dose independent rect. 2 4
447 671.13 temperature 10.0 10 > th dose independent rect. 6 20
452 671.54 atmosphere 1015.0 1440 < th dose independent rect. 3 3
467 672.81 humidity 50.0 270 > th dose dependent rect. 17 7
473 673.18 atmosphere 995.0 270 > th dose independent rect. 4 10
619 677.26 radiation 10.0 10 < th dose dependent rect. 2 17
630 677.84 humidity 60.0 270 > th dose independent rect. 17 7
633 678.03 precipitation 0.1 10 < th dose independent rect. 6 20
634 678.03 precipitation 0.1 10 < th dose dependent rect. 6 20
651 678.44 atmosphere 995.0 90 > th dose independent rect. 15 14
659 679.04 wind 3.0 10 < th dose independent rect. 24 6
662 679.15 atmosphere 995.0 90 > th dose dependent rect. 3 2
663 679.23 precipitation 0.1 270 < th dose independent rect. 24 17
664 679.23 precipitation 0.1 270 < th dose dependent rect. 24 17
667 679.36 wind 9.0 90 < th dose dependent rect. 5 21
672 679.54 atmosphere 995.0 90 > th dose independent rect. 5 22
684 680.61 radiation 10.0 270 < th dose dependent rect. 17 7
695 681.24 wind 1.0 270 > th dose independent rect. 1 2
765 683.64 radiation 1.0 90 < th dose dependent sin 3 NA
773 683.91 radiation 1.0 270 < th dose independent rect. 17 7
807 685.25 humidity 60.0 720 > th dose dependent rect. 19 4
808 685.26 atmosphere 995.0 270 > th dose independent rect. 24 17
814 685.47 temperature 30.0 270 < th dose independent rect. 17 7
820 685.61 wind 9.0 270 < th dose independent rect. 17 7
822 685.88 radiation 1.0 270 < th dose independent rect. 11 13
823 685.89 wind 9.0 90 < th dose independent rect. 15 14
865 687.14 radiation 1.0 270 < th dose independent rect. 7 17
870 687.20 radiation 40.0 10 < th dose dependent rect. 14 16
875 687.36 temperature 20.0 90 > th dose independent rect. 2 17
878 687.47 radiation 1.0 270 < th dose dependent rect. 11 13
885 687.73 atmosphere 1015.0 270 < th dose independent rect. 24 17
888 687.76 temperature 10.0 270 > th dose independent rect. 17 7
892 687.76 temperature 10.0 270 > th dose independent rect. 24 17
904 688.13 humidity 90.0 720 < th dose dependent rect. 17 2
931 688.31 temperature 25.0 720 > th dose dependent sin 12 NA
959 689.59 wind 9.0 10 < th dose independent rect. 6 18
965 689.73 humidity 50.0 10 > th dose dependent rect. 24 6
994 690.90 atmosphere 1015.0 10 < th dose dependent rect. 2 4