Os08g0413000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Valosin-containing protein (Fragment).
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Os08g0413000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Valosin-containing protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.81 | 0.329 | -5510 | 33700 | 0.00783 | -1380000 | -0.295 | 8460000 | 0.0687 | 2.59 | 995 | 90 | -- | -- |
| 52.92 | 0.341 | 3.02 | 0.133 | 0.000651 | 0.995 | -0.325 | -- | 0.0654 | 2.82 | 995 | 90 | -- | -- |
| 50 | 0.329 | -5510 | 33700 | 0.0442 | -1380000 | -- | 8460000 | 0.069 | 7.8 | 995 | 90 | -- | -- |
| 48.47 | 0.324 | 3.02 | 0.145 | 0.0303 | 2.32 | -- | -- | 0.0727 | 5.83 | 994.5 | 224 | -- | -- |
| 50.12 | 0.33 | -5510 | 33700 | -- | -1380000 | -- | 8460000 | 0.0709 | -- | 995 | 90 | -- | -- |
| 54.01 | 0.345 | 3.02 | 0.14 | 0.00853 | -- | 0.356 | -- | 0.0626 | 14.9 | -- | -- | -- | -- |
| 54.4 | 0.345 | 3.02 | 0.148 | 0.0275 | -- | -- | -- | 0.0644 | 9.96 | -- | -- | -- | -- |
| 48.52 | 0.324 | 3.02 | 0.139 | -- | 2.45 | -- | -- | 0.0726 | -- | 994.5 | 224 | -- | -- |
| 48.88 | 0.326 | 3.02 | -- | 0.0454 | 2.48 | -- | -- | 0.0532 | 7.89 | 994.5 | 220 | -- | -- |
| 54.44 | 0.345 | 3.02 | 0.148 | -- | -- | -- | -- | 0.0644 | -- | -- | -- | -- | -- |
| 54.97 | 0.347 | 3.02 | -- | 0.0272 | -- | -- | -- | 0.0479 | 9.55 | -- | -- | -- | -- |
| 49 | 0.326 | 3.02 | -- | -- | 2.46 | -- | -- | 0.0549 | -- | 994.6 | 214 | -- | -- |
| 55.02 | 0.346 | 3.02 | -- | -- | -- | -- | -- | 0.048 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.29 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 7 | 23 |
| 2 | 46.56 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 5 | 46.83 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 6 | 46.93 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 7 | 47.35 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 16 | 18 |
| 8 | 47.38 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 4 | 3 |
| 12 | 47.95 | atmosphere | 995.0 | 10 | > th | dose independent | sin | 9 | NA |
| 14 | 47.97 | wind | 1.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 15 | 48.00 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 21 | 48.06 | temperature | 30.0 | 10 | > th | dose independent | rect. | 17 | 17 |
| 24 | 48.10 | humidity | 70.0 | 30 | < th | dose independent | rect. | 18 | 1 |
| 25 | 48.10 | temperature | 30.0 | 10 | > th | dose independent | rect. | 16 | 2 |
| 26 | 48.11 | temperature | 30.0 | 30 | > th | dose independent | rect. | 18 | 1 |
| 88 | 48.16 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 17 | 1 |
| 95 | 48.16 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 17 | 1 |
| 104 | 48.20 | atmosphere | 995.0 | 10 | < th | dose independent | sin | 9 | NA |
| 128 | 48.21 | atmosphere | 995.0 | 90 | < th | dose dependent | sin | 10 | NA |
| 153 | 48.22 | atmosphere | 995.0 | 90 | < th | dose independent | sin | 10 | NA |
| 155 | 48.22 | atmosphere | 995.0 | 90 | < th | dose dependent | rect. | 16 | 23 |
| 314 | 48.35 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 497 | 48.40 | temperature | 30.0 | 10 | > th | dose independent | sin | 11 | NA |
| 521 | 48.43 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 16 | 1 |
| 558 | 48.56 | temperature | 30.0 | 10 | < th | dose independent | sin | 11 | NA |
| 561 | 48.57 | radiation | 10.0 | 90 | > th | dose dependent | rect. | 17 | 1 |
| 603 | 48.77 | radiation | 10.0 | 90 | > th | dose independent | rect. | 17 | 1 |
| 622 | 48.83 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 646 | 49.02 | temperature | 25.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 651 | 49.07 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 659 | 49.21 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 2 | 5 |
| 672 | 49.30 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 673 | 49.31 | wind | 3.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 803 | 49.70 | wind | 9.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 804 | 49.70 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 808 | 49.70 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 812 | 49.70 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 817 | 49.70 | humidity | 90.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 818 | 49.70 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 819 | 49.70 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 820 | 49.70 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 826 | 49.75 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 827 | 49.75 | humidity | 70.0 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 829 | 49.76 | wind | 5.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 833 | 49.76 | temperature | 10.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 835 | 49.76 | temperature | 30.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 836 | 49.76 | humidity | 50.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 842 | 49.76 | radiation | 1.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 846 | 49.76 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 6 | 1 |
| 847 | 49.76 | temperature | 10.0 | 30 | > th | dose independent | rect. | 7 | 23 |
| 848 | 49.76 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 908 | 49.95 | atmosphere | 995.0 | 270 | > th | dose independent | sin | 5 | NA |
| 935 | 50.01 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 942 | 50.07 | atmosphere | 995.0 | 90 | < th | dose dependent | no | NA | NA |
| 943 | 50.07 | wind | 9.0 | 30 | < th | dose dependent | rect. | 6 | 1 |