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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0412800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1262 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.65 (0.0519) R2 : 0.563
β1 : 3.98 (0.193) R2dD : 0.461 R2D : 0.199
β2 : 1.35 (0.132) R2dC : 0.1 R2C : 0.0426
β3 : -1.73 (0.152) R2dE : 0.157 R2E : -0.108
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.49 (0.12) R2dN8 : 0.246 R2N8 : -0.0642
σ : 0.945
deviance : 411.35
__
_____
C
peak time of C : 18
E
wheather : temperature
threshold : 22.39
memory length : 1499
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
410.54 0.952 5.67 3.76 1.36 -1.71 0.627 -0.705 1.43 17.9 22.4 1578 -- --
410.34 0.943 5.65 3.99 1.34 -1.72 0.645 -- 1.49 18 22.4 1499 -- --
410.02 0.943 5.67 3.75 1.35 -1.7 -- -0.684 1.42 18 22.4 1461 -- --
411.35 0.945 5.65 3.98 1.35 -1.73 -- -- 1.49 18 22.39 1499 -- --
501.75 1.04 5.65 3.63 -- -1.78 -- -0.961 1.4 -- 22.37 1388 -- --
525.97 1.08 5.78 3.38 1.4 -- 0.672 -- 0.896 17.9 -- -- -- --
527.08 1.08 5.78 3.38 1.4 -- -- -- 0.898 17.9 -- -- -- --
503.99 1.05 5.62 3.95 -- -1.78 -- -- 1.48 -- 22.37 1390 -- --
796.4 1.31 5.8 -- 1.31 -0.84 -- -- 0.79 18.1 22.57 1361 -- --
628.87 1.17 5.76 3.34 -- -- -- -- 0.866 -- -- -- -- --
827.84 1.35 5.86 -- 1.35 -- -- -- 0.522 18 -- -- -- --
885.4 1.39 5.78 -- -- -0.928 -- -- 0.78 -- 22.33 1356 -- --
922.35 1.42 5.84 -- -- -- -- -- 0.496 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 403.14 humidity 70.0 14400 > th dose dependent rect. 1 1
4 406.20 wind 1.0 14400 < th dose dependent rect. 10 2
5 406.41 radiation 10.0 14400 < th dose independent rect. 17 14
6 407.45 wind 3.0 43200 < th dose dependent rect. 23 1
10 409.84 humidity 70.0 14400 > th dose dependent rect. 22 5
14 410.59 radiation 10.0 14400 < th dose independent rect. 1 6
16 410.61 radiation 10.0 14400 < th dose independent rect. 4 3
18 410.64 wind 1.0 14400 > th dose independent rect. 11 1
22 410.75 temperature 30.0 90 < th dose dependent rect. 21 23
24 410.78 radiation 10.0 14400 < th dose independent rect. 20 11
35 411.99 humidity 90.0 14400 > th dose independent rect. 1 1
36 412.01 radiation 10.0 14400 > th dose dependent rect. 17 14
37 412.07 temperature 25.0 1440 < th dose dependent rect. 6 1
39 412.29 temperature 30.0 30 < th dose dependent rect. 19 23
47 413.12 temperature 30.0 10 < th dose dependent rect. 9 23
48 413.20 temperature 30.0 10 < th dose dependent rect. 21 23
49 413.40 radiation 10.0 4320 < th dose independent rect. 16 3
50 413.41 radiation 10.0 4320 < th dose independent rect. 16 5
53 413.46 temperature 30.0 90 < th dose dependent rect. 23 20
54 413.50 temperature 30.0 90 < th dose dependent rect. 9 23
64 413.70 radiation 10.0 4320 < th dose independent rect. 16 10
68 413.77 precipitation 0.1 43200 > th dose independent rect. 17 2
70 413.84 humidity 70.0 14400 > th dose dependent rect. 21 9
72 413.98 precipitation 0.1 43200 < th dose independent rect. 17 2
73 413.98 precipitation 0.1 43200 < th dose dependent rect. 17 2
86 414.42 humidity 70.0 43200 < th dose independent rect. 17 1
92 414.81 temperature 30.0 90 < th dose dependent rect. 11 22
93 414.90 humidity 80.0 43200 < th dose independent rect. 17 3
94 415.01 humidity 80.0 43200 > th dose independent rect. 17 3
96 415.07 radiation 10.0 14400 > th dose dependent rect. 5 2
116 415.38 humidity 60.0 43200 < th dose independent rect. 15 3
120 415.49 humidity 60.0 43200 > th dose independent rect. 15 1
122 415.50 temperature 30.0 10 < th dose dependent rect. 13 23
135 415.60 temperature 30.0 10 < th dose dependent rect. 11 23
136 415.65 humidity 60.0 43200 < th dose independent rect. 15 1
143 415.81 precipitation 0.1 43200 > th dose dependent rect. 17 2
144 415.89 humidity 70.0 43200 < th dose dependent rect. 15 3
146 415.93 humidity 90.0 14400 < th dose dependent rect. 21 6
148 415.97 precipitation 0.1 43200 > th dose dependent rect. 13 5
157 416.23 humidity 70.0 43200 < th dose dependent rect. 16 1
160 416.31 humidity 60.0 43200 > th dose independent rect. 15 3
172 416.49 wind 1.0 14400 < th dose independent rect. 10 2
174 416.52 temperature 30.0 10 < th dose dependent no NA NA
177 416.59 humidity 70.0 43200 > th dose independent rect. 17 1
193 416.91 humidity 90.0 14400 < th dose dependent rect. 22 4
195 416.95 temperature 30.0 10 < th dose dependent rect. 17 23
212 417.27 humidity 60.0 43200 > th dose independent rect. 13 9
237 417.61 temperature 10.0 4320 > th dose dependent rect. 23 1
242 417.64 radiation 10.0 14400 < th dose independent sin 13 NA
247 417.75 temperature 30.0 4320 < th dose dependent rect. 23 1
266 418.13 temperature 30.0 10 < th dose dependent rect. 15 23
289 418.48 temperature 15.0 1440 > th dose dependent rect. 22 10
291 418.54 temperature 30.0 1440 < th dose dependent rect. 22 10
299 418.63 precipitation 0.1 43200 > th dose dependent rect. 17 10
304 418.66 temperature 15.0 1440 > th dose dependent rect. 5 2
338 418.88 radiation 40.0 14400 < th dose dependent rect. 3 3
358 419.04 temperature 30.0 1440 < th dose dependent rect. 14 17
373 419.14 temperature 30.0 1440 < th dose dependent sin 9 NA
382 419.19 radiation 1.0 14400 > th dose independent rect. 15 3
420 419.34 precipitation 0.1 43200 > th dose dependent rect. 17 8
427 419.37 temperature 15.0 1440 > th dose dependent rect. 1 7
438 419.44 temperature 15.0 10 > th dose dependent no NA NA
448 419.50 temperature 15.0 1440 > th dose dependent sin 10 NA
449 419.50 temperature 30.0 1440 < th dose dependent rect. 11 20
496 419.73 wind 9.0 14400 < th dose independent rect. 15 2
505 419.76 temperature 30.0 1440 < th dose dependent rect. 22 14
512 419.79 humidity 60.0 43200 > th dose independent sin 17 NA
544 419.93 temperature 30.0 1440 < th dose dependent rect. 21 18
566 420.01 temperature 25.0 1440 < th dose dependent rect. 2 10
578 420.02 temperature 30.0 1440 < th dose dependent rect. 21 21
582 420.03 temperature 15.0 1440 > th dose dependent rect. 16 15
586 420.04 precipitation 0.1 43200 > th dose dependent rect. 14 13
588 420.05 wind 1.0 43200 > th dose dependent rect. 23 1
609 420.09 temperature 20.0 10 > th dose dependent rect. 7 23
619 420.12 precipitation 0.1 43200 > th dose independent rect. 17 6
637 420.16 precipitation 0.1 43200 < th dose independent rect. 17 6
640 420.16 precipitation 0.1 43200 < th dose dependent rect. 17 6
685 420.26 radiation 10.0 14400 > th dose independent rect. 17 14
688 420.26 temperature 30.0 1440 < th dose dependent rect. 16 20
757 420.39 radiation 20.0 14400 < th dose dependent rect. 20 10
765 420.41 temperature 15.0 1440 > th dose dependent rect. 22 5
838 420.56 temperature 25.0 1440 < th dose dependent rect. 1 14
839 420.56 temperature 25.0 1440 < th dose dependent rect. 1 17
979 420.82 wind 9.0 14400 > th dose independent rect. 15 2