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Os08g0412100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.05 (0.0206) R2 : 0.227
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.587 (0.0509) R2dC : 0.226 R2C : 0.226
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0165 (0.0435) R2dN8 : 0.000316 R2N8 : 0.000597
σ : 0.39
deviance : 69.35
__
_____
C
peak time of C : 2.54
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.87 0.315 8.06 0.478 0.58 1.67 0.142 3.69 0.147 2.63 0.7207 1446 -- --
51.4 0.334 8.06 0.768 0.624 0.803 0.154 -- 0.14 2.2 2.074 1415 -- --
44.93 0.312 8.06 0.469 0.573 1.7 -- 3.77 0.145 2.69 0.71 1449 -- --
50.75 0.332 8.03 0.738 0.606 0.728 -- -- 0.175 2.36 2.328 1433 -- --
54.9 0.345 8.06 0.526 -- 1.67 -- 3.24 0.148 -- 0.4964 6105 -- --
58.95 0.36 8.03 0.629 0.575 -- 0.066 -- 0.0868 2.5 -- -- -- --
58.97 0.36 8.03 0.628 0.575 -- -- -- 0.0864 2.53 -- -- -- --
49.88 0.329 8.01 0.743 -- 1.11 -- -- 0.188 -- 2.38 1781 -- --
64.89 0.375 8.01 -- 0.529 0.541 -- -- 0.114 3.07 9.724 1535 -- --
78.4 0.414 8.03 0.652 -- -- -- -- 0.101 -- -- -- -- --
69.35 0.39 8.05 -- 0.587 -- -- -- 0.0165 2.54 -- -- -- --
65.18 0.376 8.02 -- -- 1.06 -- -- 0.112 -- 2.889 1805 -- --
89.61 0.442 8.04 -- -- -- -- -- 0.0284 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.08 humidity 70.0 14400 < th dose independent rect. 18 14
2 44.10 humidity 70.0 14400 > th dose independent rect. 18 14
3 44.27 humidity 70.0 14400 < th dose independent rect. 18 1
9 44.56 humidity 70.0 14400 < th dose independent rect. 17 5
10 44.56 humidity 70.0 14400 > th dose independent rect. 18 6
30 44.61 humidity 70.0 14400 > th dose independent rect. 18 2
64 44.87 humidity 80.0 43200 < th dose independent rect. 4 4
66 44.89 humidity 80.0 43200 < th dose dependent rect. 1 7
71 44.95 temperature 30.0 14400 < th dose independent rect. 15 1
74 44.99 humidity 70.0 14400 < th dose dependent rect. 16 3
76 45.01 humidity 80.0 43200 < th dose independent rect. 5 2
77 45.04 radiation 40.0 4320 < th dose dependent rect. 18 2
79 45.04 humidity 70.0 14400 < th dose dependent rect. 16 16
80 45.05 wind 1.0 43200 < th dose independent rect. 1 1
82 45.06 wind 1.0 43200 > th dose independent rect. 1 1
83 45.07 humidity 70.0 14400 < th dose dependent rect. 16 1
85 45.10 temperature 30.0 14400 > th dose independent rect. 15 1
88 45.15 humidity 70.0 14400 < th dose dependent rect. 16 6
101 45.17 radiation 1.0 1440 < th dose dependent rect. 16 22
104 45.19 radiation 40.0 4320 < th dose dependent rect. 18 6
108 45.20 radiation 1.0 1440 < th dose dependent rect. 7 23
112 45.24 radiation 1.0 1440 < th dose dependent rect. 5 17
113 45.24 radiation 1.0 1440 < th dose dependent rect. 5 21
114 45.25 radiation 1.0 1440 < th dose dependent rect. 5 15
116 45.25 radiation 1.0 1440 < th dose dependent rect. 5 19
136 45.27 radiation 1.0 1440 < th dose dependent rect. 16 18
142 45.27 radiation 1.0 1440 < th dose dependent rect. 23 21
144 45.27 radiation 1.0 1440 < th dose dependent rect. 13 22
149 45.28 radiation 1.0 1440 < th dose dependent no NA NA
151 45.28 radiation 40.0 4320 < th dose dependent rect. 18 9
153 45.28 radiation 1.0 1440 < th dose dependent rect. 1 19
185 45.29 radiation 1.0 1440 < th dose dependent rect. 9 23
210 45.34 humidity 80.0 43200 > th dose independent rect. 3 4
211 45.34 radiation 20.0 14400 > th dose dependent rect. 16 1
228 45.37 radiation 1.0 1440 < th dose dependent sin 13 NA
250 45.40 humidity 90.0 43200 > th dose independent rect. 20 7
261 45.41 precipitation 0.1 43200 > th dose dependent rect. 19 1
262 45.41 radiation 1.0 1440 < th dose dependent rect. 7 18
272 45.43 radiation 1.0 1440 < th dose dependent rect. 7 13
293 45.45 humidity 90.0 43200 < th dose independent rect. 17 11
309 45.50 humidity 70.0 14400 < th dose independent sin 13 NA
323 45.54 temperature 25.0 14400 > th dose dependent rect. 17 1
326 45.55 humidity 90.0 43200 < th dose independent rect. 17 13
339 45.57 radiation 1.0 1440 < th dose dependent sin 0 NA
344 45.59 humidity 80.0 43200 > th dose independent rect. 4 1
345 45.59 humidity 80.0 14400 > th dose independent rect. 15 3
360 45.60 temperature 20.0 14400 < th dose independent rect. 24 1
376 45.63 radiation 1.0 1440 < th dose dependent rect. 18 4
379 45.64 wind 3.0 43200 > th dose independent rect. 6 4
380 45.64 radiation 1.0 1440 < th dose dependent rect. 18 2
386 45.65 radiation 1.0 1440 < th dose dependent rect. 18 6
404 45.68 radiation 1.0 1440 < th dose dependent rect. 18 8
408 45.69 humidity 50.0 14400 > th dose dependent rect. 18 1
410 45.70 humidity 90.0 43200 > th dose independent sin 12 NA
413 45.70 wind 3.0 43200 < th dose independent rect. 6 4
423 45.71 humidity 90.0 43200 < th dose independent sin 13 NA
439 45.74 humidity 90.0 43200 > th dose independent rect. 21 1
467 45.76 precipitation 0.1 43200 > th dose independent rect. 19 1
472 45.76 humidity 80.0 14400 > th dose independent rect. 13 7
486 45.79 temperature 25.0 1440 > th dose dependent rect. 15 3
499 45.80 precipitation 0.1 14400 > th dose dependent rect. 5 1
518 45.82 wind 1.0 43200 < th dose dependent rect. 24 4
520 45.83 humidity 70.0 14400 > th dose independent sin 13 NA
552 45.86 humidity 90.0 43200 > th dose independent rect. 23 1
593 45.90 humidity 80.0 43200 < th dose dependent rect. 22 1
598 45.91 precipitation 0.1 14400 < th dose independent rect. 5 1
600 45.91 precipitation 0.1 14400 < th dose dependent rect. 5 1
604 45.92 temperature 20.0 14400 > th dose independent rect. 24 1
612 45.93 precipitation 0.1 43200 < th dose independent rect. 19 1
621 45.93 precipitation 0.1 43200 < th dose dependent rect. 19 1
638 45.96 precipitation 0.1 14400 > th dose independent rect. 5 1
675 45.99 radiation 40.0 43200 > th dose dependent rect. 10 1
684 46.00 wind 3.0 43200 < th dose independent rect. 3 7
720 46.04 wind 3.0 43200 > th dose independent rect. 3 7
817 46.12 humidity 80.0 43200 < th dose independent rect. 24 1
848 46.14 radiation 20.0 14400 < th dose independent rect. 16 1
876 46.17 humidity 80.0 14400 < th dose independent rect. 13 7
888 46.18 wind 3.0 43200 < th dose dependent rect. 8 1
892 46.18 temperature 25.0 1440 > th dose dependent rect. 11 8
896 46.19 temperature 20.0 14400 < th dose independent rect. 20 6
899 46.19 radiation 20.0 14400 < th dose independent rect. 16 9
910 46.20 radiation 1.0 14400 < th dose independent rect. 18 2
912 46.20 radiation 20.0 14400 < th dose independent rect. 16 3
985 46.23 precipitation 0.1 14400 > th dose dependent rect. 4 3