Os08g0411500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0411500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55 | 0.348 | 9.21 | -0.0816 | 0.0826 | 1.82 | 2.32 | 6.53 | 0.306 | 12.1 | 0.6924 | 1606 | -- | -- |
| 67.76 | 0.386 | 9.13 | 0.43 | 0.268 | 0.456 | 0.744 | -- | 0.343 | 8.05 | 0.6924 | 1606 | -- | -- |
| 62.69 | 0.369 | 9.21 | -0.0752 | 0.472 | 1.94 | -- | 6.48 | 0.294 | 23.8 | 0.4464 | 1436 | -- | -- |
| 69.04 | 0.39 | 9.14 | 0.444 | 0.242 | 0.364 | -- | -- | 0.34 | 5.93 | 0.4464 | 1436 | -- | -- |
| 66.55 | 0.38 | 9.21 | 0.0576 | -- | 1.97 | -- | 6 | 0.377 | -- | 0.5855 | 1508 | -- | -- |
| 71.42 | 0.396 | 9.15 | 0.404 | 0.469 | -- | -0.416 | -- | 0.33 | 1.44 | -- | -- | -- | -- |
| 72.09 | 0.398 | 9.15 | 0.417 | 0.472 | -- | -- | -- | 0.331 | 1.64 | -- | -- | -- | -- |
| 69.51 | 0.388 | 9.12 | 0.555 | -- | 0.969 | -- | -- | 0.441 | -- | 2.452 | 1675 | -- | -- |
| 71.66 | 0.394 | 9.17 | -- | 0.435 | 0.328 | -- | -- | 0.273 | 1.62 | 103.7 | 11469 | -- | -- |
| 85.66 | 0.432 | 9.14 | 0.436 | -- | -- | -- | -- | 0.342 | -- | -- | -- | -- | -- |
| 76.67 | 0.41 | 9.16 | -- | 0.479 | -- | -- | -- | 0.285 | 1.66 | -- | -- | -- | -- |
| 76.9 | 0.408 | 9.13 | -- | -- | 0.804 | -- | -- | 0.371 | -- | 4.451 | 1738 | -- | -- |
| 90.68 | 0.444 | 9.15 | -- | -- | -- | -- | -- | 0.294 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 6 | 53.77 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 1 |
| 7 | 53.82 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 9 | 54.04 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 8 |
| 19 | 54.64 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 22 |
| 20 | 54.67 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 22 |
| 43 | 55.20 | temperature | 15 | 270 | > th | dose independent | rect. | 17 | 10 |
| 48 | 55.30 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 18 |
| 54 | 55.37 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 103 | 56.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 16 |
| 110 | 56.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 115 | 56.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 201 | 56.88 | temperature | 15 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 210 | 56.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 211 | 57.00 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 213 | 57.01 | temperature | 30 | 270 | > th | dose independent | sin | 1 | NA |
| 225 | 57.06 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 13 |
| 226 | 57.06 | temperature | 15 | 270 | > th | dose independent | rect. | 9 | 16 |
| 238 | 57.14 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 9 |
| 253 | 57.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 256 | 57.16 | temperature | 30 | 270 | < th | dose independent | sin | 1 | NA |
| 257 | 57.16 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 1 |
| 265 | 57.20 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 23 |
| 297 | 57.30 | temperature | 15 | 270 | > th | dose independent | rect. | 16 | 23 |
| 321 | 57.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 322 | 57.39 | temperature | 15 | 1440 | > th | dose independent | rect. | 16 | 5 |
| 363 | 57.49 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 376 | 57.55 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 396 | 57.60 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 423 | 57.63 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 466 | 57.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 6 |
| 467 | 57.78 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 10 |
| 473 | 57.79 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 474 | 57.79 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 13 |
| 482 | 57.81 | temperature | 30 | 270 | < th | dose independent | rect. | 21 | 16 |
| 483 | 57.81 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 523 | 57.92 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 618 | 57.93 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 2 |
| 632 | 57.95 | radiation | 30 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 633 | 57.96 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 635 | 57.96 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 641 | 57.97 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 650 | 57.99 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 680 | 58.08 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 22 |
| 685 | 58.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 18 |
| 687 | 58.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 694 | 58.10 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 699 | 58.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 729 | 58.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 769 | 58.17 | temperature | 25 | 270 | > th | dose dependent | sin | 0 | NA |
| 775 | 58.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 804 | 58.23 | radiation | 30 | 720 | > th | dose dependent | sin | 12 | NA |
| 879 | 58.35 | radiation | 1 | 1440 | < th | dose dependent | sin | 1 | NA |
| 895 | 58.38 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 4 |
| 915 | 58.43 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 922 | 58.44 | temperature | 20 | 14400 | > th | dose independent | rect. | 14 | 12 |
| 932 | 58.46 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 934 | 58.46 | temperature | 30 | 270 | > th | dose independent | rect. | 13 | 23 |
| 945 | 58.47 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 954 | 58.49 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 957 | 58.49 | temperature | 15 | 270 | > th | dose independent | rect. | 18 | 19 |
| 988 | 58.52 | temperature | 20 | 14400 | < th | dose independent | rect. | 14 | 12 |
| 998 | 58.53 | temperature | 15 | 270 | > th | dose independent | rect. | 6 | 22 |