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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0410900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.41 (0.0251) R2 : 0.00413
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0725 (0.0527) R2dN8 : 0.00533 R2N8 : 0.00413
σ : 0.472
deviance : 102.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.83 0.458 3.44 0.167 0.268 0.991 -0.426 5.7 -0.0921 5.32 6.957 717 -- --
97.19 0.463 3.4 0.0993 0.272 -0.099 -0.473 -- -0.0718 5.39 6.957 717 -- --
95.27 0.455 3.44 0.17 0.266 1.02 -- 5.88 -0.0925 5.5 6.923 717 -- --
97.48 0.46 3.4 0.0888 0.285 -0.202 -- -- -0.08 5.3 8.3 1012 -- --
98.9 0.463 3.45 0.168 -- 0.971 -- 6.05 -0.0884 -- 7.003 717 -- --
97.25 0.462 3.4 0.11 0.278 -- -0.495 -- -0.0685 5.35 -- -- -- --
97.86 0.463 3.4 0.109 0.275 -- -- -- -0.0662 5.32 -- -- -- --
100.1 0.466 3.42 0.0254 -- -0.235 -- -- -0.0477 -- 10.8 2625 -- --
97.15 0.459 3.4 -- 0.277 -0.219 -- -- -0.0897 5.16 8.875 2261 -- --
101.81 0.471 3.4 0.118 -- -- -- -- -0.0594 -- -- -- -- --
98.17 0.463 3.4 -- 0.277 -- -- -- -0.0783 5.3 -- -- -- --
99.58 0.465 3.41 -- -- -0.349 -- -- -0.0981 -- 10.8 2580 -- --
102.18 0.472 3.41 -- -- -- -- -- -0.0725 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.08 humidity 80.0 10 < th dose independent rect. 6 2
3 85.50 radiation 10.0 30 > th dose independent rect. 7 1
6 85.81 humidity 80.0 10 < th dose independent rect. 2 6
7 85.81 humidity 80.0 10 < th dose independent rect. 24 8
12 87.06 temperature 25.0 30 > th dose independent rect. 7 1
36 87.98 atmosphere 1000.0 30 > th dose independent rect. 3 23
37 88.03 temperature 15.0 30 > th dose independent rect. 3 23
38 88.06 radiation 10.0 10 > th dose independent rect. 16 16
39 88.09 radiation 1.0 43200 < th dose dependent rect. 3 1
42 88.33 atmosphere 1005.0 90 > th dose dependent rect. 2 1
47 88.69 temperature 25.0 90 > th dose independent rect. 1 1
50 88.80 temperature 25.0 90 > th dose dependent rect. 1 2
67 88.95 wind 9.0 1440 < th dose independent rect. 3 1
68 88.95 temperature 10.0 1440 > th dose independent rect. 3 1
71 88.95 temperature 30.0 1440 < th dose independent rect. 3 1
75 88.95 humidity 50.0 1440 > th dose independent rect. 3 1
84 88.95 atmosphere 995.0 1440 > th dose independent rect. 3 1
85 88.95 radiation 1.0 1440 < th dose independent rect. 3 1
105 88.95 temperature 10.0 1440 > th dose independent rect. 4 23
116 89.11 wind 3.0 30 < th dose dependent rect. 2 1
117 89.12 wind 3.0 30 < th dose independent rect. 2 1
120 89.13 atmosphere 1005.0 30 > th dose independent rect. 2 1
130 89.19 humidity 90.0 30 > th dose independent rect. 2 1
132 89.20 temperature 10.0 30 > th dose independent rect. 2 1
134 89.20 temperature 30.0 30 < th dose independent rect. 2 1
135 89.20 humidity 50.0 30 > th dose independent rect. 2 1
138 89.20 atmosphere 995.0 30 > th dose independent rect. 2 1
140 89.20 atmosphere 1010.0 30 < th dose independent rect. 2 1
142 89.20 radiation 1.0 30 < th dose independent rect. 2 1
147 89.20 precipitation 0.1 30 < th dose independent rect. 2 1
149 89.20 humidity 50.0 30 > th dose dependent rect. 2 1
153 89.20 radiation 1.0 30 < th dose dependent rect. 2 1
158 89.20 precipitation 0.1 30 < th dose dependent rect. 2 1
164 89.29 atmosphere 1015.0 30 < th dose dependent rect. 2 1
166 89.38 temperature 30.0 30 < th dose dependent rect. 2 1
168 89.43 wind 1.0 30 > th dose independent rect. 2 1
175 89.50 precipitation 0.1 30 < th dose independent rect. 3 23
176 89.50 precipitation 0.1 30 < th dose dependent rect. 3 23
233 89.93 wind 9.0 30 < th dose independent rect. 3 23
242 90.65 humidity 50.0 30 > th dose independent rect. 3 23
244 90.74 radiation 10.0 30 < th dose dependent rect. 3 23
250 91.00 humidity 80.0 14400 < th dose dependent rect. 1 8
251 91.01 atmosphere 1005.0 30 > th dose independent rect. 7 1
255 91.07 radiation 10.0 30 < th dose independent rect. 3 23
263 91.28 temperature 15.0 30 > th dose independent rect. 8 23
266 91.38 wind 3.0 14400 > th dose independent rect. 10 1
269 91.42 wind 5.0 14400 < th dose dependent rect. 10 2
276 91.66 humidity 90.0 10 < th dose dependent rect. 7 1
278 91.68 temperature 20.0 10 > th dose dependent rect. 7 1
291 91.81 atmosphere 1000.0 30 > th dose independent rect. 8 23
304 91.98 wind 1.0 14400 > th dose dependent rect. 10 2
311 92.07 wind 3.0 14400 < th dose independent rect. 10 1
312 92.08 humidity 90.0 90 < th dose independent rect. 2 1
313 92.12 wind 5.0 10 < th dose dependent rect. 7 1
320 92.26 wind 3.0 30 < th dose independent rect. 7 1
331 92.30 humidity 90.0 90 < th dose dependent rect. 2 6
332 92.31 wind 5.0 14400 < th dose independent rect. 9 6
353 92.44 wind 5.0 14400 > th dose independent rect. 9 6
359 92.50 humidity 70.0 14400 > th dose independent rect. 8 1
361 92.52 wind 1.0 30 > th dose independent rect. 7 1
395 92.56 temperature 30.0 30 < th dose independent rect. 3 23
405 92.61 wind 1.0 1440 > th dose independent rect. 2 1
414 92.66 radiation 10.0 10 > th dose independent sin 11 NA
435 92.75 humidity 70.0 14400 < th dose independent rect. 8 1
437 92.75 atmosphere 995.0 720 > th dose independent rect. 23 16
439 92.76 temperature 20.0 90 > th dose independent rect. 3 3
444 92.78 wind 1.0 1440 < th dose dependent rect. 2 1
452 92.81 wind 9.0 720 < th dose independent rect. 15 17
455 92.82 humidity 70.0 14400 > th dose independent rect. 4 5
475 92.85 temperature 25.0 270 > th dose independent rect. 23 4
484 92.87 atmosphere 995.0 30 > th dose dependent rect. 7 1
495 92.95 wind 9.0 1440 < th dose independent rect. 8 1
498 92.95 temperature 10.0 30 > th dose independent rect. 7 1
500 92.95 temperature 10.0 1440 > th dose independent rect. 8 1
505 92.95 temperature 30.0 30 < th dose independent rect. 7 1
506 92.95 humidity 50.0 30 > th dose independent rect. 7 1
508 92.95 humidity 50.0 1440 > th dose independent rect. 8 1
510 92.95 atmosphere 995.0 30 > th dose independent rect. 7 1
511 92.95 atmosphere 995.0 1440 > th dose independent rect. 8 1
514 92.95 atmosphere 1015.0 30 < th dose independent rect. 7 1
515 92.95 atmosphere 1015.0 1440 < th dose independent rect. 8 1
516 92.95 precipitation 0.1 30 < th dose independent rect. 7 1
518 92.95 temperature 10.0 1440 > th dose independent rect. 9 23
521 92.95 precipitation 0.1 30 < th dose dependent rect. 7 1
524 92.96 radiation 20.0 10 < th dose independent rect. 7 1
527 92.96 wind 9.0 30 < th dose independent rect. 8 23
547 92.99 humidity 90.0 4320 > th dose independent rect. 3 2
558 93.03 radiation 40.0 30 < th dose independent rect. 7 1
560 93.04 wind 1.0 1440 < th dose independent rect. 2 1
567 93.05 radiation 1.0 10 > th dose dependent rect. 7 1
583 93.10 wind 9.0 720 < th dose independent rect. 15 8
584 93.11 wind 7.0 720 < th dose independent rect. 20 7
593 93.13 humidity 70.0 14400 < th dose independent rect. 6 3
606 93.14 atmosphere 995.0 720 > th dose independent rect. 8 7
610 93.14 temperature 10.0 30 > th dose dependent rect. 3 23
617 93.17 wind 7.0 720 < th dose independent sin 13 NA
618 93.17 humidity 90.0 4320 < th dose independent rect. 4 1
621 93.17 wind 1.0 30 < th dose independent rect. 23 4
625 93.17 temperature 15.0 90 > th dose dependent rect. 3 3
629 93.18 precipitation 0.1 30 < th dose independent rect. 8 23
630 93.18 precipitation 0.1 30 < th dose dependent rect. 8 23
634 93.21 humidity 80.0 720 > th dose independent rect. 20 1
636 93.22 precipitation 0.1 14400 < th dose independent rect. 24 8
637 93.22 wind 7.0 720 < th dose independent rect. 15 15
639 93.22 precipitation 0.1 14400 < th dose dependent rect. 24 8
641 93.23 precipitation 0.1 14400 > th dose independent rect. 2 2
643 93.23 precipitation 0.1 14400 > th dose independent rect. 24 8
658 93.25 atmosphere 1015.0 90 < th dose independent rect. 6 21
659 93.25 wind 7.0 720 > th dose dependent sin 12 NA
664 93.26 humidity 80.0 720 > th dose dependent rect. 3 1
676 93.29 wind 5.0 14400 > th dose independent rect. 23 18
679 93.30 precipitation 0.1 1440 < th dose independent rect. 8 1
681 93.30 temperature 10.0 720 > th dose independent rect. 15 8
682 93.30 temperature 10.0 720 > th dose independent rect. 23 16
683 93.30 wind 5.0 14400 < th dose independent rect. 23 18
685 93.30 precipitation 0.1 1440 < th dose dependent rect. 8 1
686 93.30 temperature 25.0 270 > th dose dependent rect. 23 4
708 93.34 humidity 80.0 90 > th dose dependent rect. 3 3
714 93.35 temperature 15.0 720 > th dose independent rect. 8 7
715 93.35 temperature 10.0 720 > th dose independent rect. 3 8
716 93.35 atmosphere 995.0 720 > th dose independent rect. 3 8
719 93.35 temperature 10.0 720 > th dose independent rect. 11 16
721 93.35 precipitation 0.1 14400 > th dose dependent rect. 2 2
724 93.36 precipitation 0.1 720 < th dose independent rect. 15 8
728 93.36 wind 3.0 30 < th dose dependent rect. 2 6
730 93.36 precipitation 0.1 720 < th dose dependent rect. 15 8
731 93.36 wind 7.0 720 > th dose dependent rect. 15 14
746 93.37 wind 7.0 720 > th dose dependent rect. 15 12
748 93.38 precipitation 0.1 14400 > th dose independent rect. 24 5
760 93.39 humidity 50.0 720 > th dose independent rect. 3 8
771 93.40 wind 1.0 10 > th dose independent rect. 8 23
776 93.41 precipitation 0.1 14400 < th dose independent rect. 24 5
779 93.41 precipitation 0.1 14400 < th dose dependent rect. 24 5
784 93.43 wind 7.0 720 > th dose independent sin 12 NA
787 93.43 precipitation 0.1 14400 < th dose independent rect. 2 2
788 93.43 precipitation 0.1 14400 < th dose dependent rect. 2 2
790 93.43 precipitation 0.1 14400 > th dose dependent rect. 24 9
792 93.44 humidity 90.0 90 > th dose independent rect. 3 3
801 93.45 wind 5.0 14400 < th dose independent sin 1 NA
819 93.47 wind 7.0 720 > th dose independent rect. 15 14
830 93.48 wind 7.0 720 > th dose independent rect. 15 12
849 93.50 wind 1.0 30 < th dose independent rect. 12 15
865 93.52 wind 5.0 14400 > th dose independent sin 1 NA
877 93.53 humidity 90.0 4320 < th dose independent rect. 3 5
881 93.54 humidity 90.0 720 > th dose independent rect. 3 1
891 93.55 humidity 80.0 10 < th dose independent rect. 20 12
897 93.55 wind 7.0 720 > th dose dependent rect. 12 17
906 93.56 wind 7.0 720 > th dose independent rect. 15 2
911 93.56 wind 9.0 720 > th dose independent rect. 12 6
918 93.56 wind 7.0 720 > th dose dependent rect. 12 14
922 93.57 humidity 60.0 43200 < th dose independent rect. 11 1
928 93.57 wind 9.0 720 > th dose independent rect. 12 11
945 93.58 temperature 15.0 90 > th dose independent rect. 17 13
982 93.60 precipitation 0.1 14400 > th dose dependent rect. 24 5
986 93.61 temperature 10.0 720 > th dose independent rect. 20 7
987 93.61 temperature 30.0 720 < th dose independent rect. 20 7
988 93.61 humidity 50.0 720 > th dose independent rect. 20 7
991 93.61 atmosphere 995.0 720 > th dose independent rect. 20 7
992 93.61 radiation 1.0 720 < th dose independent rect. 20 7
999 93.61 wind 9.0 720 < th dose independent rect. 3 8