Os08g0408500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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Os08g0408500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.22 | 0.29 | 12.2 | 1.82 | 0.238 | -0.751 | 1.16 | 0.623 | 0.432 | 22.8 | 16.06 | 1239 | -- | -- |
| 38.53 | 0.289 | 12.2 | 1.68 | 0.249 | -0.795 | 1.23 | -- | 0.396 | 22.9 | 14.95 | 1198 | -- | -- |
| 43 | 0.305 | 12.2 | 1.91 | 0.294 | -0.753 | -- | 1.31 | 0.465 | 21.6 | 16.1 | 1080 | -- | -- |
| 44.36 | 0.31 | 12.3 | 1.63 | 0.263 | -0.747 | -- | -- | 0.382 | 21.6 | 15.44 | 1182 | -- | -- |
| 46.7 | 0.318 | 12.2 | 1.91 | -- | -0.667 | -- | 1.08 | 0.463 | -- | 16.65 | 1336 | -- | -- |
| 48.95 | 0.328 | 12.3 | 1.44 | 0.172 | -- | 1.17 | -- | 0.251 | 22.7 | -- | -- | -- | -- |
| 53.74 | 0.343 | 12.3 | 1.4 | 0.218 | -- | -- | -- | 0.251 | 20.3 | -- | -- | -- | -- |
| 47.16 | 0.32 | 12.2 | 1.63 | -- | -0.707 | -- | -- | 0.385 | -- | 15.46 | 1442 | -- | -- |
| 104.77 | 0.477 | 12.3 | -- | 0.24 | -0.166 | -- | -- | 0.115 | 20.1 | 13.21 | 281 | -- | -- |
| 56.36 | 0.351 | 12.3 | 1.39 | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
| 105.09 | 0.48 | 12.3 | -- | 0.212 | -- | -- | -- | 0.0954 | 20.7 | -- | -- | -- | -- |
| 80.95 | 0.419 | 12.4 | -- | -- | 0.833 | -- | -- | -0.184 | -- | 14.9 | 47520 | -- | -- |
| 107.65 | 0.484 | 12.3 | -- | -- | -- | -- | -- | 0.0937 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 16 |
| 6 | 35.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 13 | 35.93 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 19 | 36.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 10 |
| 32 | 36.38 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 40 | 36.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 41 | 36.60 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 46 | 36.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 5 |
| 47 | 36.73 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 51 | 36.76 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 89 | 37.04 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 102 | 37.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 15 |
| 138 | 37.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 19 |
| 150 | 37.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 13 |
| 152 | 37.30 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 158 | 37.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 9 |
| 238 | 37.58 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 267 | 37.65 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 16 |
| 282 | 37.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 15 |
| 368 | 37.90 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 448 | 38.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 453 | 38.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 504 | 38.34 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 508 | 38.35 | humidity | 80 | 14400 | > th | dose dependent | sin | 12 | NA |
| 515 | 38.37 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 519 | 38.39 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 552 | 38.47 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 569 | 38.50 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 586 | 38.53 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 587 | 38.53 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 611 | 38.57 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 5 |
| 613 | 38.57 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 617 | 38.58 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 627 | 38.59 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 637 | 38.59 | temperature | 15 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 638 | 38.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 748 | 38.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 6 | 22 |
| 784 | 38.68 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 789 | 38.68 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 792 | 38.68 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 4 |
| 820 | 38.69 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 821 | 38.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 839 | 38.69 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 919 | 38.71 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 922 | 38.72 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 19 |
| 962 | 38.73 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 7 |