Os08g0407000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GTP-binding protein, HSR1-related domain containing protein.
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Os08g0407000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GTP-binding protein, HSR1-related domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.59 | 0.28 | 11.4 | 0.0405 | 1.33 | 0.534 | -0.255 | 0.0785 | -0.382 | 19 | 25.68 | 223 | -- | -- |
| 35.61 | 0.278 | 11.4 | 0.0191 | 1.33 | 0.537 | -0.234 | -- | -0.387 | 19 | 25.64 | 222 | -- | -- |
| 35.75 | 0.278 | 11.4 | 0.0271 | 1.32 | 0.538 | -- | 0.0117 | -0.388 | 19 | 25.7 | 222 | -- | -- |
| 35.74 | 0.278 | 11.5 | 0.0237 | 1.32 | 0.54 | -- | -- | -0.39 | 19 | 25.67 | 222 | -- | -- |
| 86.17 | 0.432 | 11.5 | -0.353 | -- | 1.33 | -- | -0.617 | -0.655 | -- | 25.82 | 386 | -- | -- |
| 49.65 | 0.33 | 11.4 | 0.178 | 1.69 | -- | -0.205 | -- | -0.168 | 18.5 | -- | -- | -- | -- |
| 49.75 | 0.33 | 11.4 | 0.181 | 1.69 | -- | -- | -- | -0.169 | 18.5 | -- | -- | -- | -- |
| 87.03 | 0.434 | 11.5 | -0.219 | -- | 1.34 | -- | -- | -0.641 | -- | 25.9 | 387 | -- | -- |
| 35.76 | 0.279 | 11.5 | -- | 1.32 | 0.543 | -- | -- | -0.394 | 19 | 25.7 | 222 | -- | -- |
| 197.83 | 0.657 | 11.4 | 0.139 | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
| 50.62 | 0.333 | 11.4 | -- | 1.68 | -- | -- | -- | -0.189 | 18.5 | -- | -- | -- | -- |
| 87.99 | 0.437 | 11.5 | -- | -- | 1.29 | -- | -- | -0.58 | -- | 25.87 | 385 | -- | -- |
| 198.34 | 0.657 | 11.4 | -- | -- | -- | -- | -- | -0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.47 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 18 |
| 3 | 32.60 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 4 | 32.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 7 | 32.77 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 37 | 33.78 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 61 | 34.34 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 62 | 34.35 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 77 | 34.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 85 | 34.62 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 120 | 35.15 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 121 | 35.18 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 8 |
| 123 | 35.19 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 167 | 35.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 11 |
| 217 | 35.78 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 250 | 35.94 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 18 |
| 278 | 36.10 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 21 |
| 286 | 36.13 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 17 |
| 312 | 36.23 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 19 |
| 408 | 36.59 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 817 | 37.56 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 4 |
| 868 | 37.66 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 1 |
| 967 | 37.84 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 969 | 37.84 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 988 | 37.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 4 |