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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0406900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0423) R2 : 0.161
β1 : 0.375 (0.16) R2dD : 0.0115 R2D : 0.00588
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.17 (0.26) R2dE : 0.198 R2E : 0.0198
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3.71 (0.641) R2dD*E : 0.0991 R2D*E : -0.0526
γ1 : -0.174 (0.0905) R2dN8 : 0.00955 R2N8 : 0.015
σ : 0.777
deviance : 278.05
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 20
memory length : 208
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.02
open length of G : 16.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
273.84 0.778 2.99 0.373 0.2 2.39 1.06 4.38 -0.173 19.2 19.95 231 4.03 16.3
296.77 0.802 2.93 0.596 0.116 1.34 0.298 -- -0.111 19.7 20.2 220 3.49 17.8
276.49 0.774 2.98 0.368 0.191 2.28 -- 4.02 -0.177 18.7 19.99 225 4 16.6
296.19 0.802 2.93 0.554 0.0951 1.25 -- -- -0.132 18.8 20.2 159 3.81 18
278.05 0.777 2.98 0.375 -- 2.17 -- 3.71 -0.174 -- 20 208 4.02 16.8
321.84 0.841 2.96 0.33 0.0103 -- 0.222 -- -0.247 22.6 -- -- -- --
321.96 0.84 2.96 0.322 0.0411 -- -- -- -0.247 17.7 -- -- -- --
294.61 0.799 2.93 0.55 -- 1.2 -- -- -0.14 -- 20.5 148 3.59 18.2
302.2 0.81 2.94 -- 0.0788 1.24 -- -- -0.159 18.6 20.4 143 3.7 18.1
322.05 0.839 2.96 0.321 -- -- -- -- -0.248 -- -- -- -- --
324.7 0.843 2.97 -- 0.0361 -- -- -- -0.283 18.1 -- -- -- --
301.72 0.809 2.93 -- -- 1.07 -- -- -0.185 -- 20.47 149 3.53 18.1
324.76 0.841 2.97 -- -- -- -- -- -0.283 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 276.51 temperature 20 270 < th dose independent rect. 4 16
8 283.76 temperature 20 270 < th dose independent rect. 4 7
10 283.77 temperature 20 270 < th dose independent rect. 4 4
20 284.59 temperature 20 270 < th dose independent sin 0 NA
22 285.35 temperature 20 270 > th dose independent sin 0 NA
23 286.19 temperature 20 270 < th dose independent rect. 4 1
38 287.15 temperature 25 10 < th dose dependent rect. 5 17
57 289.22 wind 5 4320 < th dose independent rect. 20 7
59 289.37 wind 5 4320 > th dose independent rect. 20 7
79 291.15 atmosphere 1015 4320 > th dose dependent rect. 11 1
85 291.45 atmosphere 1015 4320 > th dose dependent rect. 9 6
88 291.52 atmosphere 1015 4320 > th dose dependent rect. 10 3
91 291.64 temperature 25 90 < th dose dependent rect. 5 5
92 291.72 temperature 20 10 < th dose independent rect. 5 17
105 291.99 wind 5 4320 > th dose dependent rect. 21 5
107 292.08 temperature 20 10 < th dose independent sin 23 NA
113 292.18 atmosphere 1015 4320 > th dose independent rect. 11 3
121 292.32 atmosphere 1015 4320 < th dose independent rect. 11 3
132 292.50 temperature 20 10 > th dose independent sin 23 NA
141 292.60 temperature 25 10 < th dose dependent rect. 5 15
144 292.63 atmosphere 1015 4320 > th dose independent rect. 10 6
146 292.64 atmosphere 1015 4320 < th dose independent rect. 10 6
155 292.71 atmosphere 1015 4320 > th dose independent rect. 9 9
163 292.75 atmosphere 1015 4320 < th dose independent rect. 9 9
167 292.78 temperature 20 1440 < th dose independent rect. 5 1
177 292.85 atmosphere 1015 4320 > th dose dependent sin 23 NA
199 293.05 temperature 20 1440 > th dose independent rect. 5 1
297 293.70 wind 3 4320 > th dose dependent rect. 24 1
310 293.84 atmosphere 1015 4320 > th dose independent sin 23 NA
319 293.88 atmosphere 1015 4320 < th dose independent rect. 3 17
323 293.89 atmosphere 1015 4320 > th dose dependent rect. 13 1
327 293.91 wind 7 1440 < th dose independent rect. 22 8
336 293.94 atmosphere 1015 4320 < th dose independent rect. 13 1
337 293.94 atmosphere 1015 4320 > th dose independent rect. 3 17
340 293.95 atmosphere 1015 4320 > th dose independent rect. 13 1
354 293.99 temperature 25 270 < th dose dependent rect. 4 2
355 294.01 atmosphere 1015 4320 < th dose independent sin 23 NA
510 294.75 temperature 20 10 < th dose independent rect. 5 15
519 294.81 temperature 25 10 < th dose dependent rect. 5 7
534 294.88 temperature 20 1440 > th dose independent rect. 4 16
545 294.94 temperature 25 270 < th dose dependent rect. 1 21
576 295.06 atmosphere 1015 4320 > th dose dependent rect. 7 22
606 295.15 atmosphere 1015 4320 > th dose dependent no NA NA
616 295.17 atmosphere 1015 4320 > th dose dependent rect. 19 23
627 295.20 atmosphere 1015 4320 > th dose dependent rect. 17 23
649 295.26 atmosphere 1015 4320 > th dose dependent rect. 15 23
674 295.32 temperature 20 1440 < th dose independent rect. 4 16
675 295.32 temperature 30 90 < th dose dependent rect. 16 17
709 295.44 atmosphere 1015 4320 > th dose dependent rect. 11 23
788 295.78 wind 7 1440 < th dose independent rect. 24 6
876 296.16 atmosphere 1015 4320 < th dose independent rect. 3 1
936 296.44 atmosphere 1015 4320 > th dose independent rect. 8 22
950 296.47 temperature 25 90 < th dose dependent rect. 4 22
958 296.49 atmosphere 1015 4320 < th dose independent rect. 8 22
971 296.52 atmosphere 1015 4320 > th dose independent no NA NA
992 296.58 atmosphere 1015 4320 < th dose independent no NA NA