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Os08g0400200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SRA-YDG domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.28 (0.0351) R2 : 0.899
β1 : 2.57 (0.134) R2dD : 0.0911 R2D : 0.0172
β2 : 1.78 (0.115) R2dC : 0.093 R2C : 0.351
β3 : -4.63 (0.124) R2dE : 0.522 R2E : 0.736
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.85 (0.501) R2dD*E : 0.0202 R2D*E : -0.0319
γ1 : 0.382 (0.0751) R2dN8 : 0.00834 R2N8 : -0.0159
σ : 0.647
deviance : 193.02
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C
peak time of C : 16.4
E
wheather : temperature
threshold : 14.2
memory length : 203
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.1
open length of G : 9.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
197.44 0.66 7.29 2.46 1.64 -4.81 -1.1 3.71 0.391 16.4 14.4 247 19 9.14
204.56 0.666 7.33 2.28 1.68 -4.63 -2.39 -- 0.374 16.4 14.2 193 19.2 9.3
193.02 0.647 7.28 2.57 1.78 -4.63 -- 4.85 0.382 16.4 14.2 203 19.1 9.3
224.49 0.698 7.33 2.2 1.84 -4.55 -- -- 0.278 16.7 14.1 197 19 9.42
245.65 0.73 7.24 2.7 -- -5.5 -- 5.54 0.52 -- 11.97 206 19.3 9.97
435 0.978 7.37 1.76 4.9 -- -1.72 -- -0.00489 14.5 -- -- -- --
445.63 0.989 7.38 1.71 4.89 -- -- -- -0.0152 14.5 -- -- -- --
272.11 0.768 7.33 2.15 -- -5.41 -- -- 0.264 -- 11.23 215 19.2 10
336.42 0.854 7.42 -- 1.98 -4.22 -- -- -0.0706 16.6 12.72 183 19 9.37
1849.99 2.01 7.41 1.51 -- -- -- -- -0.137 -- -- -- -- --
523.01 1.07 7.42 -- 4.86 -- -- -- -0.206 14.5 -- -- -- --
385.52 0.914 7.38 -- -- -5.35 -- -- 0.0518 -- 9.562 256 19 10.1
1909.8 2.04 7.45 -- -- -- -- -- -0.304 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 201.80 temperature 15 270 > th dose dependent rect. 19 9
9 229.18 temperature 20 90 > th dose independent rect. 20 9
23 247.82 temperature 20 270 > th dose independent rect. 9 18
24 248.29 temperature 20 90 > th dose independent rect. 11 17
62 260.50 atmosphere 1010 90 < th dose independent rect. 20 9
89 269.59 temperature 30 270 < th dose dependent rect. 16 16
105 274.82 temperature 25 270 < th dose dependent sin 15 NA
110 275.80 temperature 25 720 < th dose dependent rect. 13 11
150 280.21 atmosphere 1015 90 < th dose dependent rect. 20 9
189 283.21 atmosphere 1010 10 < th dose independent rect. 20 10
231 286.00 temperature 10 270 > th dose dependent rect. 9 18
246 286.91 temperature 10 270 > th dose dependent rect. 8 20
345 292.29 temperature 20 10 < th dose dependent rect. 12 15
370 293.34 temperature 10 720 > th dose dependent rect. 16 6
372 293.43 temperature 25 720 < th dose dependent sin 19 NA
412 294.77 temperature 20 90 > th dose independent rect. 19 22
465 296.34 atmosphere 1015 10 < th dose dependent rect. 20 10
488 297.19 temperature 15 90 > th dose dependent rect. 11 17
706 304.12 atmosphere 995 270 > th dose dependent rect. 15 17
724 304.62 temperature 25 720 < th dose dependent rect. 19 2
728 304.82 temperature 20 10 < th dose dependent rect. 12 23
785 305.57 atmosphere 1010 270 < th dose independent rect. 10 17
902 307.19 temperature 25 90 < th dose dependent rect. 5 22