Os08g0399900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0399900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.16 | 0.298 | 2.83 | 0.00515 | 0.121 | -0.138 | -0.514 | 0.373 | 0.0649 | 1.76 | 9.374 | 10 | -- | -- |
| 40.32 | 0.296 | 2.83 | -0.0246 | 0.11 | -0.148 | -0.171 | -- | 0.0545 | 1.96 | 19.33 | 7 | -- | -- |
| 40.46 | 0.296 | 2.84 | -0.0109 | 0.109 | -0.164 | -- | 0.0181 | 0.0563 | 1.5 | 19.24 | 11 | -- | -- |
| 40.39 | 0.296 | 2.83 | -0.0188 | 0.0985 | -0.139 | -- | -- | 0.0576 | 2.47 | 19.22 | 7 | -- | -- |
| 40.74 | 0.297 | 2.83 | -0.0138 | -- | -0.086 | -- | -0.0196 | 0.0633 | -- | 19.24 | 12 | -- | -- |
| 40.98 | 0.3 | 2.83 | -0.0149 | 0.0529 | -- | -0.289 | -- | 0.0518 | 6.23 | -- | -- | -- | -- |
| 41.11 | 0.3 | 2.83 | -0.017 | 0.0614 | -- | -- | -- | 0.0533 | 8.48 | -- | -- | -- | -- |
| 40.73 | 0.297 | 2.83 | -0.0221 | -- | -0.0863 | -- | -- | 0.0515 | -- | 19.32 | 9 | -- | -- |
| 40.4 | 0.296 | 2.83 | -- | 0.0984 | -0.14 | -- | -- | 0.0594 | 2.45 | 19.22 | 7 | -- | -- |
| 41.32 | 0.3 | 2.83 | -0.0167 | -- | -- | -- | -- | 0.0539 | -- | -- | -- | -- | -- |
| 41.12 | 0.3 | 2.83 | -- | 0.0613 | -- | -- | -- | 0.0552 | 8.5 | -- | -- | -- | -- |
| 40.74 | 0.297 | 2.83 | -- | -- | -0.0858 | -- | -- | 0.058 | -- | 19.24 | 9 | -- | -- |
| 41.33 | 0.3 | 2.83 | -- | -- | -- | -- | -- | 0.0558 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.94 | radiation | 30 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 3 | 34.86 | radiation | 30 | 10 | > th | dose independent | rect. | 15 | 17 |
| 5 | 35.16 | humidity | 90 | 30 | > th | dose dependent | rect. | 8 | 2 |
| 7 | 35.21 | humidity | 90 | 30 | > th | dose independent | rect. | 8 | 2 |
| 51 | 35.99 | humidity | 80 | 90 | < th | dose dependent | rect. | 24 | 7 |
| 53 | 36.02 | radiation | 10 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 54 | 36.05 | radiation | 10 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 71 | 36.11 | humidity | 70 | 30 | < th | dose independent | rect. | 18 | 14 |
| 75 | 36.11 | humidity | 70 | 90 | < th | dose dependent | rect. | 18 | 14 |
| 82 | 36.12 | humidity | 70 | 10 | < th | dose dependent | rect. | 19 | 13 |
| 93 | 36.13 | humidity | 80 | 90 | < th | dose dependent | rect. | 6 | 2 |
| 98 | 36.14 | radiation | 30 | 30 | > th | dose dependent | rect. | 7 | 2 |
| 116 | 36.15 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 1 |
| 191 | 36.16 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 194 | 36.16 | radiation | 20 | 90 | > th | dose independent | rect. | 6 | 1 |
| 282 | 36.16 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 584 | 36.41 | radiation | 10 | 90 | < th | dose independent | rect. | 8 | 1 |
| 603 | 36.64 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 1 |
| 608 | 36.66 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 700 | 36.84 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 737 | 36.92 | radiation | 10 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 854 | 37.49 | radiation | 30 | 10 | < th | dose independent | sin | 11 | NA |
| 917 | 37.70 | wind | 1 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 920 | 37.72 | wind | 3 | 10 | > th | dose independent | rect. | 7 | 1 |
| 931 | 37.79 | radiation | 30 | 10 | > th | dose independent | rect. | 14 | 2 |