Os08g0398800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0398800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.62 | 0.26 | 8.92 | 1.7 | 0.421 | 0.8 | 0.712 | 0.179 | 0.645 | 21.6 | 27.5 | 259 | -- | -- |
| 30.67 | 0.258 | 8.92 | 1.72 | 0.425 | 0.799 | 0.704 | -- | 0.652 | 21.6 | 27.48 | 260 | -- | -- |
| 32.46 | 0.265 | 8.92 | 1.66 | 0.397 | 0.808 | -- | 0.304 | 0.641 | 21.6 | 27.31 | 218 | -- | -- |
| 32.56 | 0.266 | 8.92 | 1.7 | 0.426 | 0.782 | -- | -- | 0.648 | 21.9 | 26.88 | 276 | -- | -- |
| 37.41 | 0.286 | 8.92 | 1.6 | -- | 0.871 | -- | 0.619 | 0.63 | -- | 28.1 | 12 | -- | -- |
| 39.66 | 0.295 | 8.96 | 1.52 | 0.435 | -- | 0.64 | -- | 0.48 | 23.3 | -- | -- | -- | -- |
| 41.4 | 0.301 | 8.96 | 1.5 | 0.432 | -- | -- | -- | 0.477 | 23.5 | -- | -- | -- | -- |
| 37.83 | 0.288 | 8.91 | 1.7 | -- | 0.858 | -- | -- | 0.645 | -- | 29.53 | 14 | -- | -- |
| 100.41 | 0.469 | 8.99 | -- | 0.429 | 0.0911 | -- | -- | 0.321 | 23.6 | 51.96 | 36 | -- | -- |
| 53.09 | 0.34 | 8.95 | 1.51 | -- | -- | -- | -- | 0.482 | -- | -- | -- | -- | -- |
| 100.5 | 0.469 | 8.99 | -- | 0.449 | -- | -- | -- | 0.31 | 23.7 | -- | -- | -- | -- |
| 109.62 | 0.489 | 8.97 | -- | -- | 0.402 | -- | -- | 0.381 | -- | 29.53 | 14 | -- | -- |
| 113.18 | 0.497 | 8.99 | -- | -- | -- | -- | -- | 0.314 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.61 | temperature | 25 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 6 | 30.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 22 |
| 30 | 31.05 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 32 | 31.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 48 | 31.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 68 | 31.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 70 | 31.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 84 | 31.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 100 | 31.42 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 125 | 31.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 143 | 31.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 147 | 31.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 197 | 31.79 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 201 | 31.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 202 | 31.80 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 220 | 31.85 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 234 | 31.89 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 341 | 32.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 353 | 32.25 | humidity | 70 | 14400 | > th | dose dependent | rect. | 21 | 10 |
| 357 | 32.26 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 358 | 32.26 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 10 |
| 382 | 32.31 | temperature | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 415 | 32.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 431 | 32.43 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 14 |
| 433 | 32.43 | humidity | 70 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 470 | 32.49 | humidity | 50 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 490 | 32.52 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 499 | 32.53 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 21 |
| 500 | 32.53 | humidity | 90 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 587 | 32.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 16 |
| 629 | 32.65 | humidity | 50 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 634 | 32.65 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 643 | 32.66 | temperature | 25 | 270 | < th | dose dependent | sin | 22 | NA |
| 677 | 32.69 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 4 |
| 693 | 32.70 | atmosphere | 995 | 10 | > th | dose dependent | no | NA | NA |
| 694 | 32.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 717 | 32.71 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 722 | 32.72 | humidity | 90 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 729 | 32.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 14 |
| 739 | 32.73 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 23 |
| 754 | 32.74 | atmosphere | 1015 | 10 | < th | dose dependent | no | NA | NA |
| 755 | 32.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 769 | 32.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 806 | 32.76 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 852 | 32.79 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 857 | 32.80 | humidity | 90 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 866 | 32.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 870 | 32.81 | temperature | 25 | 1440 | < th | dose dependent | sin | 5 | NA |
| 887 | 32.81 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 912 | 32.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 12 |
| 925 | 32.83 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 926 | 32.83 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 968 | 32.85 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 5 | 23 |