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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0398500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to KED-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.43 (0.0296) R2 : 0.214
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.29 (0.124) R2dE : 0.195 R2E : 0.206
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.114 (0.0632) R2dN8 : 0.00756 R2N8 : 0.0187
σ : 0.554
deviance : 141.35
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1001
memory length : 5780
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
129.9 0.535 3.4 0.173 0.156 1.27 0.23 4.1 -0.12 9.6 999.3 5452 -- --
139.38 0.55 3.42 0.086 0.161 1.28 0.284 -- -0.104 9.58 1001 5806 -- --
129.99 0.531 3.4 0.181 0.163 1.27 -- 4.11 -0.121 8.58 999.2 5462 -- --
139.48 0.55 3.42 0.0952 0.172 1.28 -- -- -0.106 8.39 1001 5796 -- --
131.51 0.534 3.41 0.182 -- 1.29 -- 4.17 -0.119 -- 999.2 5462 -- --
171.55 0.614 3.45 0.237 0.173 -- 0.241 -- -0.215 9.42 -- -- -- --
171.68 0.614 3.45 0.244 0.179 -- -- -- -0.215 8.59 -- -- -- --
141.12 0.553 3.43 0.092 -- 1.28 -- -- -0.105 -- 1001 5794 -- --
139.69 0.55 3.43 -- 0.173 1.29 -- -- -0.115 8.34 1001 5807 -- --
173.49 0.615 3.45 0.245 -- -- -- -- -0.214 -- -- -- -- --
173.25 0.616 3.46 -- 0.18 -- -- -- -0.243 8.49 -- -- -- --
141.35 0.554 3.43 -- -- 1.29 -- -- -0.114 -- 1001 5780 -- --
175.07 0.618 3.46 -- -- -- -- -- -0.241 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 128.19 humidity 70 1440 > th dose dependent rect. 1 3
7 128.61 humidity 90 1440 < th dose independent rect. 2 1
17 129.09 humidity 90 1440 < th dose dependent rect. 3 1
18 129.15 humidity 50 1440 > th dose dependent rect. 24 7
21 129.24 humidity 90 1440 < th dose dependent rect. 23 5
25 129.52 humidity 90 1440 < th dose dependent rect. 23 8
83 131.29 humidity 90 1440 < th dose dependent rect. 24 1
95 131.79 wind 5 4320 > th dose independent rect. 21 1
100 131.99 wind 5 4320 > th dose dependent rect. 20 3
107 132.10 humidity 90 1440 < th dose independent rect. 1 6
110 132.19 wind 5 4320 > th dose dependent rect. 18 6
140 133.00 wind 5 4320 < th dose independent rect. 20 2
156 133.74 atmosphere 995 14400 < th dose independent rect. 17 1
157 133.74 atmosphere 995 14400 < th dose dependent rect. 17 1
189 134.01 atmosphere 995 14400 > th dose independent rect. 17 1
213 134.49 atmosphere 1000 4320 < th dose dependent rect. 7 2
223 134.61 atmosphere 995 14400 > th dose independent rect. 16 9
231 134.65 atmosphere 995 14400 < th dose independent rect. 17 7
234 134.66 atmosphere 995 14400 < th dose independent rect. 16 9
244 134.69 atmosphere 995 14400 < th dose independent rect. 15 13
263 134.72 atmosphere 995 14400 < th dose dependent rect. 16 7
268 134.74 atmosphere 995 14400 > th dose independent rect. 16 18
281 134.76 atmosphere 995 14400 > th dose independent rect. 15 21
290 134.78 atmosphere 995 14400 > th dose independent sin 14 NA
291 134.78 atmosphere 995 14400 < th dose independent sin 14 NA
333 134.93 wind 7 4320 < th dose independent rect. 18 7
377 135.07 atmosphere 995 14400 < th dose independent no NA NA
408 135.07 atmosphere 995 14400 < th dose independent rect. 23 20
419 135.07 atmosphere 995 14400 < th dose independent rect. 1 22
530 135.14 atmosphere 995 14400 > th dose independent rect. 11 22
542 135.15 atmosphere 995 14400 > th dose independent rect. 23 21
543 135.15 atmosphere 995 14400 > th dose independent rect. 4 22
548 135.15 atmosphere 995 14400 > th dose independent rect. 7 23
553 135.16 atmosphere 995 14400 > th dose independent no NA NA
554 135.16 atmosphere 995 14400 > th dose independent rect. 11 16
557 135.16 atmosphere 995 14400 > th dose independent rect. 24 19
562 135.16 atmosphere 995 14400 > th dose independent rect. 9 21
588 135.17 atmosphere 995 14400 > th dose independent rect. 8 19
774 135.43 wind 7 4320 < th dose independent rect. 18 4
857 135.70 atmosphere 995 14400 < th dose dependent sin 18 NA
875 135.78 atmosphere 995 14400 < th dose dependent rect. 4 18
883 135.79 atmosphere 995 14400 < th dose dependent rect. 4 15
906 135.82 wind 5 4320 > th dose independent rect. 16 9
927 135.86 humidity 90 1440 > th dose independent rect. 24 7
928 135.86 humidity 80 1440 > th dose dependent rect. 5 1
964 135.99 humidity 90 1440 > th dose independent rect. 1 2
968 136.00 wind 5 4320 > th dose independent rect. 17 7