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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0397800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.53 (0.0506) R2 : 0.433
β1 : -2.61 (0.19) R2dD : 0.255 R2D : 0.121
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.03 (0.132) R2dE : 0.316 R2E : 0.169
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.108 (0.108) R2dN8 : 0.00157 R2N8 : 0.00242
σ : 0.946
deviance : 412.9
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 29.8
memory length : 1285
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
398.86 0.938 5.58 -3.22 0.385 -2.43 -1.19 3.31 0.178 10.3 29.97 1265 -- --
399.58 0.931 5.53 -2.58 0.392 -2.08 -1.16 -- 0.107 10.9 29.8 1267 -- --
404.44 0.937 5.57 -3.2 0.393 -2.41 -- 2.94 0.185 10.6 29.97 1264 -- --
404.36 0.937 5.53 -2.61 0.383 -2.09 -- -- 0.0991 10.7 29.78 1264 -- --
413.35 0.947 5.58 -3.15 -- -2.31 -- 2.76 0.184 -- 29.91 1285 -- --
615.94 1.16 5.57 -1.88 0.141 -- -1.51 -- -0.0564 10 -- -- -- --
622.8 1.17 5.57 -1.95 0.255 -- -- -- -0.0649 6.71 -- -- -- --
412.9 0.946 5.53 -2.61 -- -2.03 -- -- 0.108 -- 29.8 1285 -- --
575.41 1.12 5.49 -- 0.401 -1.7 -- -- 0.325 10.4 29.8 1256 -- --
626.19 1.17 5.58 -1.94 -- -- -- -- -0.0599 -- -- -- -- --
722.95 1.26 5.52 -- 0.233 -- -- -- 0.152 7.21 -- -- -- --
573.41 1.12 5.44 -- -- -1.66 -- -- 0.553 -- 30.9 1250 -- --
725.82 1.26 5.53 -- -- -- -- -- 0.156 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 401.26 temperature 30 1440 < th dose independent rect. 10 2
3 401.40 temperature 30 1440 < th dose independent rect. 16 21
6 401.55 temperature 30 1440 < th dose independent rect. 18 19
10 402.11 temperature 30 1440 > th dose independent rect. 11 1
14 402.36 temperature 30 1440 > th dose independent rect. 16 21
18 402.76 temperature 30 1440 > th dose independent rect. 9 4
19 402.82 temperature 30 1440 > th dose independent rect. 18 19
27 403.78 temperature 30 1440 < th dose independent rect. 6 7
28 403.80 temperature 30 1440 < th dose independent rect. 2 11
32 403.83 temperature 30 1440 < th dose independent rect. 21 16
49 404.63 temperature 30 1440 < th dose independent rect. 9 19
58 404.70 temperature 30 1440 < th dose independent rect. 9 11
59 404.70 temperature 30 1440 < th dose independent rect. 9 13
64 404.71 temperature 30 1440 < th dose independent rect. 9 16
120 405.47 temperature 30 1440 < th dose independent rect. 23 21
121 405.47 temperature 30 1440 < th dose independent rect. 21 23
122 405.47 temperature 30 1440 < th dose independent rect. 23 23
125 405.48 temperature 30 1440 < th dose independent rect. 2 18
126 405.48 temperature 30 1440 < th dose independent rect. 2 20
135 405.49 temperature 30 1440 < th dose independent rect. 2 23
136 405.50 temperature 30 1440 < th dose independent no NA NA
161 405.52 temperature 30 1440 < th dose independent rect. 18 23
185 405.58 temperature 30 1440 < th dose independent sin 1 NA
205 405.92 temperature 25 1440 > th dose dependent rect. 6 2
220 406.05 temperature 30 1440 > th dose independent rect. 9 10
239 406.22 temperature 30 1440 < th dose independent sin 9 NA
263 406.74 radiation 20 1440 > th dose independent rect. 16 15
275 406.90 temperature 30 1440 > th dose independent no NA NA
422 407.16 temperature 25 1440 > th dose dependent rect. 18 1
424 407.20 temperature 30 1440 > th dose dependent rect. 17 21
426 407.27 temperature 30 1440 > th dose independent sin 0 NA
429 407.28 temperature 30 1440 > th dose independent rect. 18 23
432 407.29 temperature 30 1440 > th dose dependent rect. 11 3
442 407.45 temperature 30 1440 > th dose dependent rect. 10 5
446 407.52 temperature 30 1440 < th dose independent rect. 16 1
522 408.11 temperature 30 1440 > th dose independent sin 9 NA
552 408.60 temperature 30 1440 > th dose independent rect. 16 1
555 408.63 temperature 30 1440 > th dose dependent sin 4 NA
613 409.12 radiation 30 1440 > th dose independent rect. 15 17
630 409.15 temperature 25 1440 > th dose dependent rect. 16 18
661 409.60 temperature 25 4320 < th dose independent rect. 7 1
681 410.00 radiation 20 1440 > th dose independent rect. 16 1
791 410.89 temperature 30 1440 > th dose dependent no NA NA
919 411.16 temperature 30 1440 < th dose independent rect. 15 14
928 411.36 temperature 30 1440 < th dose independent rect. 15 5
930 411.37 temperature 30 1440 < th dose independent rect. 15 7
931 411.38 temperature 30 1440 < th dose independent rect. 15 10
947 411.51 temperature 30 1440 > th dose independent rect. 15 4