Os08g0396500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : C1-like domain containing protein.
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Os08g0396500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : C1-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.23 | 0.546 | 7.21 | 3.44 | 0.919 | -2.11 | -0.857 | 14.4 | -0.915 | 1.98 | 29.92 | 2673 | -- | -- |
| 152.21 | 0.575 | 7.44 | 1.07 | 1.06 | -0.688 | -1.11 | -- | -0.646 | 1.91 | 25.3 | 13800 | -- | -- |
| 137.55 | 0.546 | 7.22 | 3.39 | 0.916 | -2.13 | -- | 14.4 | -0.978 | 2.13 | 30.03 | 2684 | -- | -- |
| 144.11 | 0.559 | 7.41 | 1.5 | 0.902 | -1.17 | -- | -- | -0.623 | 2.04 | 18.9 | 18940 | -- | -- |
| 188.45 | 0.639 | 7.22 | 3.39 | -- | -2.13 | -- | 15.1 | -0.978 | -- | 30.03 | 2684 | -- | -- |
| 159.66 | 0.592 | 7.53 | 0.491 | 0.867 | -- | -0.783 | -- | -1.03 | 2.28 | -- | -- | -- | -- |
| 161.87 | 0.596 | 7.52 | 0.512 | 0.869 | -- | -- | -- | -1.02 | 2.42 | -- | -- | -- | -- |
| 183.82 | 0.634 | 7.49 | 0.794 | -- | -0.885 | -- | -- | -0.888 | -- | 18.93 | 18997 | -- | -- |
| 159.96 | 0.589 | 7.5 | -- | 0.921 | -0.519 | -- | -- | -0.965 | 1.95 | 28.5 | 1003 | -- | -- |
| 206.43 | 0.671 | 7.52 | 0.549 | -- | -- | -- | -- | -1 | -- | -- | -- | -- | -- |
| 168.79 | 0.608 | 7.53 | -- | 0.879 | -- | -- | -- | -1.08 | 2.43 | -- | -- | -- | -- |
| 197.08 | 0.656 | 7.53 | -- | -- | -0.479 | -- | -- | -1.05 | -- | 28.5 | 1003 | -- | -- |
| 214.38 | 0.683 | 7.53 | -- | -- | -- | -- | -- | -1.06 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.64 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 3 | 122.40 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 4 | 122.54 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 7 | 123.21 | humidity | 80 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 9 | 123.25 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 13 | 123.33 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 25 | 123.49 | humidity | 80 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 40 | 123.78 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 44 | 123.81 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 46 | 123.87 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 49 | 123.89 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 9 |
| 65 | 124.24 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 73 | 124.36 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 85 | 124.48 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 15 |
| 103 | 124.71 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 5 |
| 116 | 124.90 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 121 | 124.95 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 14 |
| 123 | 124.97 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 132 | 125.01 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 151 | 125.21 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 155 | 125.25 | wind | 3 | 43200 | > th | dose independent | sin | 2 | NA |
| 160 | 125.29 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 168 | 125.36 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 179 | 125.51 | wind | 5 | 43200 | < th | dose dependent | rect. | 6 | 10 |
| 180 | 125.53 | wind | 7 | 43200 | < th | dose dependent | rect. | 5 | 12 |
| 204 | 125.69 | wind | 3 | 43200 | < th | dose independent | sin | 2 | NA |
| 209 | 125.71 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 14 |
| 214 | 125.76 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 221 | 125.80 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 223 | 125.83 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 269 | 126.19 | wind | 5 | 43200 | < th | dose dependent | sin | 1 | NA |
| 301 | 126.37 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 21 |
| 321 | 126.49 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 20 |
| 345 | 126.58 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 370 | 126.68 | wind | 1 | 43200 | > th | dose dependent | sin | 1 | NA |
| 395 | 126.79 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 21 |
| 402 | 126.81 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 448 | 127.00 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 20 |
| 601 | 127.46 | wind | 3 | 43200 | > th | dose independent | rect. | 16 | 22 |
| 654 | 127.62 | wind | 5 | 43200 | < th | dose dependent | rect. | 19 | 22 |
| 710 | 127.78 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 718 | 127.81 | wind | 3 | 43200 | > th | dose independent | no | NA | NA |
| 753 | 127.91 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 754 | 127.91 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 761 | 127.94 | wind | 3 | 43200 | < th | dose independent | rect. | 16 | 22 |
| 783 | 128.00 | wind | 5 | 14400 | > th | dose dependent | rect. | 10 | 2 |
| 798 | 128.04 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 811 | 128.07 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 824 | 128.10 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 861 | 128.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 882 | 128.19 | wind | 1 | 43200 | > th | dose dependent | rect. | 19 | 22 |
| 914 | 128.25 | wind | 7 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 954 | 128.33 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 956 | 128.34 | wind | 3 | 43200 | < th | dose independent | no | NA | NA |
| 960 | 128.35 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 993 | 128.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 999 | 128.41 | wind | 7 | 43200 | < th | dose dependent | rect. | 5 | 23 |