Os08g0396200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os08g0396200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.19 | 0.583 | 6.39 | -0.484 | 0.583 | 0.991 | -0.577 | 0.69 | -0.174 | 16.8 | 23.73 | 355 | -- | -- |
| 154.57 | 0.579 | 6.38 | -0.391 | 0.588 | 0.882 | -0.713 | -- | -0.135 | 16.9 | 24.6 | 350 | -- | -- |
| 154.93 | 0.58 | 6.4 | -0.528 | 0.582 | 1.08 | -- | 1.07 | -0.194 | 16.8 | 23.32 | 356 | -- | -- |
| 155.88 | 0.581 | 6.38 | -0.389 | 0.6 | 0.854 | -- | -- | -0.142 | 16.8 | 24.9 | 338 | -- | -- |
| 171.34 | 0.61 | 6.39 | -0.55 | -- | 0.784 | -- | 0.69 | -0.212 | -- | 24 | 627 | -- | -- |
| 165.11 | 0.602 | 6.41 | -0.609 | 0.5 | -- | -0.691 | -- | -0.306 | 16.8 | -- | -- | -- | -- |
| 166.35 | 0.604 | 6.41 | -0.612 | 0.495 | -- | -- | -- | -0.309 | 16.8 | -- | -- | -- | -- |
| 171.57 | 0.61 | 6.37 | -0.418 | -- | 0.715 | -- | -- | -0.164 | -- | 25.7 | 1099 | -- | -- |
| 159.51 | 0.588 | 6.36 | -- | 0.628 | 1.02 | -- | -- | -0.0712 | 16.8 | 24.89 | 337 | -- | -- |
| 179.33 | 0.626 | 6.41 | -0.631 | -- | -- | -- | -- | -0.322 | -- | -- | -- | -- | -- |
| 176.23 | 0.621 | 6.4 | -- | 0.506 | -- | -- | -- | -0.241 | 16.7 | -- | -- | -- | -- |
| 172.61 | 0.612 | 6.36 | -- | -- | 0.86 | -- | -- | -0.0755 | -- | 25.92 | 2604 | -- | -- |
| 189.83 | 0.643 | 6.39 | -- | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 148.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 3 |
| 2 | 148.63 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 12 |
| 17 | 149.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 24 | 149.95 | temperature | 25 | 270 | < th | dose dependent | sin | 8 | NA |
| 38 | 150.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 46 | 150.69 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 71 | 151.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 165 | 152.26 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 166 | 152.26 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 15 | 8 |
| 167 | 152.26 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 13 | 10 |
| 170 | 152.27 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 177 | 152.29 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 192 | 152.35 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 240 | 152.52 | atmosphere | 1015 | 14400 | > th | dose dependent | sin | 17 | NA |
| 274 | 152.59 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 275 | 152.59 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 306 | 152.65 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 307 | 152.65 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 15 | 8 |
| 314 | 152.66 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 381 | 152.77 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 417 | 152.84 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 431 | 152.86 | atmosphere | 1015 | 14400 | > th | dose independent | sin | 18 | NA |
| 445 | 152.88 | atmosphere | 1015 | 14400 | < th | dose independent | sin | 18 | NA |
| 481 | 152.92 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 4 |
| 548 | 153.01 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 555 | 153.01 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 562 | 153.02 | temperature | 25 | 720 | < th | dose independent | rect. | 21 | 6 |
| 588 | 153.05 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 594 | 153.05 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 12 | 6 |
| 598 | 153.06 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 608 | 153.07 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 618 | 153.07 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 654 | 153.10 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 707 | 153.14 | atmosphere | 1015 | 14400 | > th | dose dependent | no | NA | NA |
| 762 | 153.17 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 769 | 153.18 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 10 | 7 |
| 812 | 153.21 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 831 | 153.22 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 911 | 153.27 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 985 | 153.32 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 8 |
| 986 | 153.32 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 14 |