Os08g0395700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0395700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.02 | 0.453 | 3.16 | 0.211 | 0.382 | 7.73 | 0.729 | -23.3 | 0.366 | 19.6 | 0.4075 | 177 | -- | -- |
| 101.4 | 0.473 | 3.1 | 0.495 | 0.418 | -0.345 | 0.976 | -- | 0.346 | 19.6 | 0.4075 | 177 | -- | -- |
| 94.36 | 0.452 | 3.15 | 0.202 | 0.384 | 7.85 | -- | -23.3 | 0.374 | 19.3 | 0.426 | 175 | -- | -- |
| 96.12 | 0.457 | 3.09 | 0.407 | 0.33 | 1.4 | -- | -- | 0.356 | 19.9 | 0.8889 | 178 | -- | -- |
| 101.9 | 0.47 | 3.15 | 0.154 | -- | 8.5 | -- | -25.2 | 0.356 | -- | 0.4785 | 176 | -- | -- |
| 101.52 | 0.472 | 3.1 | 0.491 | 0.42 | -- | 0.98 | -- | 0.347 | 19.6 | -- | -- | -- | -- |
| 104.09 | 0.478 | 3.1 | 0.469 | 0.427 | -- | -- | -- | 0.35 | 19.2 | -- | -- | -- | -- |
| 102.74 | 0.472 | 3.08 | 0.388 | -- | 1.96 | -- | -- | 0.362 | -- | 1 | 177 | -- | -- |
| 99.79 | 0.465 | 3.1 | -- | 0.366 | 1.81 | -- | -- | 0.319 | 19.2 | 0.9627 | 177 | -- | -- |
| 113.75 | 0.498 | 3.09 | 0.461 | -- | -- | -- | -- | 0.342 | -- | -- | -- | -- | -- |
| 109.89 | 0.49 | 3.11 | -- | 0.423 | -- | -- | -- | 0.297 | 19.3 | -- | -- | -- | -- |
| 106.75 | 0.481 | 3.1 | -- | -- | 2.11 | -- | -- | 0.322 | -- | 1.056 | 177 | -- | -- |
| 119.36 | 0.51 | 3.1 | -- | -- | -- | -- | -- | 0.291 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.47 | precipitation | 1e-01 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 2 | 88.48 | precipitation | 1e-01 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 3 | 88.48 | precipitation | 1e-01 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 4 | 88.51 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 9 | 89.82 | precipitation | 1e-01 | 270 | > th | dose independent | rect. | 4 | 14 |
| 11 | 90.19 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 8 | 10 |
| 16 | 90.26 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 6 | 12 |
| 22 | 90.39 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 23 | 90.39 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 14 | 4 |
| 24 | 90.43 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 27 | 90.44 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 35 | 90.50 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 52 | 90.80 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 4 | 15 |
| 54 | 90.82 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 136 | 91.17 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 141 | 91.18 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 156 | 91.20 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 216 | 91.30 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 12 | 6 |
| 222 | 91.30 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 223 | 91.30 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 12 | 6 |
| 260 | 91.38 | atmosphere | 1e+03 | 14400 | < th | dose independent | sin | 3 | NA |
| 271 | 91.40 | atmosphere | 1e+03 | 14400 | > th | dose independent | sin | 3 | NA |
| 276 | 91.40 | radiation | 1e+00 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 278 | 91.41 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 12 | 6 |
| 287 | 91.42 | precipitation | 1e-01 | 270 | > th | dose independent | rect. | 13 | 5 |
| 321 | 91.49 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 9 | 9 |
| 323 | 91.49 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 9 | 9 |
| 358 | 91.56 | radiation | 1e+00 | 43200 | < th | dose dependent | rect. | 23 | 5 |
| 367 | 91.58 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 9 | 9 |
| 376 | 91.59 | wind | 5e+00 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 405 | 91.64 | wind | 7e+00 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 441 | 91.69 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 6 | 12 |
| 448 | 91.69 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 6 | 12 |
| 490 | 91.75 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 6 | 12 |
| 500 | 91.76 | wind | 7e+00 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 613 | 91.89 | precipitation | 1e-01 | 270 | > th | dose independent | rect. | 16 | 1 |
| 621 | 91.89 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 643 | 91.92 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 656 | 91.93 | precipitation | 1e-01 | 270 | > th | dose dependent | sin | 1 | NA |
| 668 | 91.95 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 678 | 91.96 | wind | 7e+00 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 693 | 91.97 | atmosphere | 1e+03 | 14400 | < th | dose independent | no | NA | NA |
| 744 | 92.00 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 747 | 92.00 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 13 | 6 |
| 750 | 92.01 | atmosphere | 1e+03 | 14400 | > th | dose independent | no | NA | NA |
| 768 | 92.03 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 775 | 92.03 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 906 | 92.16 | precipitation | 1e-01 | 270 | < th | dose independent | sin | 1 | NA |
| 920 | 92.16 | precipitation | 1e-01 | 270 | < th | dose dependent | sin | 1 | NA |
| 958 | 92.20 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 14 | 4 |
| 997 | 92.24 | radiation | 1e+00 | 43200 | < th | dose dependent | rect. | 23 | 3 |