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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0395400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0208) R2 : 0.00365
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0567 (0.0439) R2dN8 : 0.00471 R2N8 : 0.00365
σ : 0.393
deviance : 70.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
64.15 0.376 3.36 0.1 0.21 0.444 -0.247 0.808 -0.13 8.52 88.41 5839 -- --
65.08 0.376 3.35 0.0484 0.213 0.471 -0.253 -- -0.141 8.43 87 5826 -- --
64.34 0.374 3.36 0.093 0.21 0.448 -- 0.808 -0.13 8.53 88.51 5842 -- --
65.26 0.376 3.35 0.0414 0.207 0.472 -- -- -0.142 8.5 87 5810 -- --
66.81 0.381 3.36 0.0939 -- 0.456 -- 0.798 -0.131 -- 88.44 5819 -- --
68.05 0.387 3.33 0.0255 0.21 -- -0.262 -- -0.0567 8.51 -- -- -- --
68.27 0.387 3.33 0.0173 0.211 -- -- -- -0.0567 8.5 -- -- -- --
67.67 0.383 3.36 0.0412 -- 0.48 -- -- -0.144 -- 87 5808 -- --
65.3 0.376 3.35 -- 0.208 0.468 -- -- -0.143 8.52 86.51 5797 -- --
70.76 0.393 3.34 0.0182 -- -- -- -- -0.0547 -- -- -- -- --
68.28 0.387 3.33 -- 0.211 -- -- -- -0.0587 8.49 -- -- -- --
67.71 0.383 3.36 -- -- 0.476 -- -- -0.142 -- 86.48 5808 -- --
70.77 0.393 3.34 -- -- -- -- -- -0.0567 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.29 atmosphere 1000.0 30 > th dose independent rect. 3 23
2 61.30 wind 1.0 10 < th dose dependent rect. 2 1
4 61.58 atmosphere 1005.0 90 > th dose dependent rect. 2 1
5 61.72 atmosphere 1005.0 10 > th dose dependent rect. 2 2
6 61.74 radiation 1.0 43200 < th dose dependent rect. 3 1
11 62.07 humidity 50.0 10 > th dose independent rect. 3 23
12 62.14 atmosphere 1015.0 10 < th dose dependent rect. 2 1
13 62.16 humidity 90.0 10 > th dose dependent rect. 2 1
14 62.17 wind 1.0 10 < th dose independent rect. 2 1
15 62.18 temperature 15.0 10 > th dose independent rect. 3 23
20 62.22 temperature 30.0 10 < th dose dependent rect. 2 1
29 62.33 temperature 10.0 10 > th dose independent rect. 2 1
31 62.33 temperature 30.0 10 < th dose independent rect. 2 1
32 62.33 humidity 50.0 10 > th dose independent rect. 2 1
35 62.33 atmosphere 995.0 10 > th dose independent rect. 2 1
36 62.33 atmosphere 1010.0 10 < th dose independent rect. 2 1
38 62.33 radiation 1.0 10 < th dose independent rect. 2 1
43 62.33 precipitation 0.1 10 < th dose independent rect. 2 1
45 62.33 radiation 1.0 10 < th dose dependent rect. 2 1
50 62.33 precipitation 0.1 10 < th dose dependent rect. 2 1
51 62.34 temperature 25.0 90 > th dose independent rect. 1 1
52 62.34 humidity 50.0 10 > th dose dependent rect. 2 1
60 62.38 humidity 90.0 10 > th dose independent rect. 2 1
62 62.39 wind 9.0 30 < th dose independent rect. 3 23
63 62.39 wind 1.0 14400 < th dose dependent rect. 6 1
64 62.39 temperature 10.0 10 > th dose dependent rect. 2 1
108 62.49 atmosphere 995.0 10 > th dose dependent rect. 2 1
118 62.53 humidity 80.0 14400 < th dose dependent rect. 4 5
119 62.54 wind 1.0 30 > th dose independent rect. 2 1
131 62.63 humidity 80.0 14400 < th dose dependent rect. 7 2
132 62.64 atmosphere 995.0 720 > th dose independent rect. 23 16
135 62.69 humidity 70.0 14400 > th dose independent rect. 8 1
140 62.72 wind 9.0 720 < th dose independent rect. 3 8
141 62.74 precipitation 0.1 720 < th dose independent rect. 15 8
143 62.74 precipitation 0.1 720 < th dose dependent rect. 15 8
144 62.76 precipitation 0.1 30 < th dose independent rect. 3 23
145 62.76 precipitation 0.1 30 < th dose dependent rect. 3 23
149 62.79 humidity 70.0 14400 < th dose independent rect. 8 1
153 62.83 wind 9.0 1440 < th dose independent rect. 3 1
154 62.83 temperature 10.0 1440 > th dose independent rect. 3 1
157 62.83 temperature 30.0 1440 < th dose independent rect. 3 1
161 62.83 humidity 50.0 1440 > th dose independent rect. 3 1
170 62.83 atmosphere 995.0 1440 > th dose independent rect. 3 1
171 62.83 radiation 1.0 1440 < th dose independent rect. 3 1
191 62.83 temperature 10.0 1440 > th dose independent rect. 4 23
216 62.97 humidity 70.0 14400 > th dose independent rect. 4 5
220 62.98 humidity 70.0 14400 > th dose independent rect. 1 8
225 62.99 temperature 10.0 720 > th dose independent rect. 15 8
226 62.99 temperature 10.0 720 > th dose independent rect. 23 16
228 63.01 temperature 10.0 720 > th dose independent rect. 3 8
229 63.01 atmosphere 995.0 720 > th dose independent rect. 3 8
230 63.01 temperature 10.0 720 > th dose independent rect. 11 16
233 63.05 wind 1.0 14400 < th dose independent rect. 6 1
237 63.07 humidity 60.0 4320 > th dose dependent rect. 3 7
270 63.27 humidity 50.0 720 > th dose independent rect. 3 8
277 63.33 precipitation 0.1 720 < th dose independent rect. 11 16
278 63.33 precipitation 0.1 720 < th dose dependent rect. 11 16
292 63.39 atmosphere 1015.0 720 < th dose independent rect. 3 8
325 63.48 humidity 80.0 14400 < th dose dependent rect. 23 11
356 63.58 humidity 60.0 14400 < th dose dependent rect. 12 1
366 63.62 wind 1.0 14400 > th dose independent rect. 6 1
395 63.65 temperature 10.0 30 > th dose dependent rect. 3 23
412 63.69 temperature 20.0 720 > th dose dependent rect. 3 1
433 63.73 humidity 90.0 4320 < th dose dependent sin 6 NA
463 63.79 humidity 90.0 90 < th dose independent rect. 2 1
483 63.82 wind 1.0 14400 < th dose independent rect. 4 4
490 63.83 humidity 50.0 4320 > th dose dependent sin 5 NA
495 63.84 wind 1.0 14400 > th dose independent rect. 4 4
562 63.90 atmosphere 1010.0 10 < th dose independent rect. 3 23
578 63.92 humidity 60.0 14400 < th dose independent rect. 11 1
593 63.95 humidity 50.0 14400 > th dose independent rect. 14 2
613 63.97 wind 9.0 30 < th dose dependent rect. 3 23
629 64.00 temperature 30.0 1440 < th dose independent rect. 14 21
653 64.03 radiation 40.0 10 < th dose independent rect. 3 23
667 64.05 temperature 30.0 1440 > th dose independent rect. 14 21
685 64.07 humidity 60.0 14400 < th dose dependent rect. 7 7
700 64.08 radiation 40.0 720 < th dose independent rect. 15 8
711 64.09 wind 5.0 14400 < th dose independent rect. 11 1
732 64.10 humidity 50.0 14400 > th dose independent rect. 13 4
740 64.11 humidity 70.0 4320 > th dose independent rect. 20 18
750 64.12 humidity 80.0 4320 > th dose independent sin 5 NA
757 64.12 humidity 50.0 4320 > th dose dependent rect. 11 1
781 64.14 humidity 50.0 14400 > th dose independent rect. 13 16
786 64.14 humidity 50.0 14400 > th dose independent rect. 13 21
798 64.15 temperature 25.0 720 > th dose dependent rect. 3 5
852 64.17 temperature 30.0 1440 < th dose independent rect. 14 15
866 64.18 temperature 20.0 720 > th dose independent rect. 3 2
867 64.18 temperature 30.0 1440 < th dose independent rect. 14 8
869 64.18 temperature 30.0 1440 < th dose independent rect. 14 10
875 64.18 humidity 60.0 14400 < th dose dependent sin 4 NA
877 64.18 humidity 90.0 4320 < th dose dependent rect. 11 1
888 64.19 temperature 30.0 1440 < th dose independent rect. 14 5
952 64.22 humidity 80.0 4320 < th dose independent sin 5 NA
969 64.23 temperature 30.0 1440 > th dose independent rect. 14 5
997 64.24 precipitation 0.1 720 < th dose independent rect. 3 8