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Os08g0393900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.0164) R2 : 0.553
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.948 (0.0404) R2dC : 0.543 R2C : 0.537
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.121 (0.0345) R2dN8 : 0.0156 R2N8 : 0.00954
σ : 0.309
deviance : 43.69
__
_____
C
peak time of C : 21.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.05 0.262 12.6 -0.0194 0.915 0.18 -1.47 -0.48 -0.167 21.4 20.2 758 -- --
31.27 0.26 12.6 0.0185 0.914 0.259 -1.63 -- -0.163 21.4 20.6 2087 -- --
36.66 0.282 12.6 -0.155 0.885 0.143 -- -1.16 -0.207 21.4 21.5 743 -- --
40.6 0.297 12.6 0.034 0.938 0.311 -- -- -0.174 21.4 19.92 2496 -- --
69.24 0.388 12.6 -0.204 -- 0.716 -- -0.947 -0.438 -- 25.3 740 -- --
33.1 0.27 12.6 0.146 0.94 -- -1.61 -- -0.101 21.5 -- -- -- --
42.59 0.306 12.6 0.205 0.948 -- -- -- -0.0984 21.4 -- -- -- --
73.01 0.398 12.6 -0.022 -- 0.714 -- -- -0.37 -- 25.3 739 -- --
40.63 0.297 12.6 -- 0.93 0.331 -- -- -0.181 21.4 19.9 2496 -- --
95.27 0.456 12.5 0.211 -- -- -- -- -0.101 -- -- -- -- --
43.69 0.309 12.6 -- 0.948 -- -- -- -0.121 21.5 -- -- -- --
72.98 0.398 12.6 -- -- 0.702 -- -- -0.355 -- 25.24 739 -- --
96.44 0.458 12.5 -- -- -- -- -- -0.125 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.77 temperature 20.0 30 > th dose dependent rect. 2 7
3 29.09 temperature 20.0 270 > th dose dependent rect. 24 8
4 29.20 temperature 20.0 270 > th dose dependent rect. 23 10
17 29.57 wind 1.0 30 > th dose independent rect. 6 14
22 29.62 temperature 20.0 270 > th dose dependent rect. 2 4
27 29.67 temperature 25.0 270 > th dose independent rect. 1 7
32 29.72 radiation 1.0 30 > th dose independent rect. 9 21
34 29.78 temperature 20.0 720 > th dose dependent rect. 21 6
48 29.87 temperature 10.0 720 > th dose dependent rect. 21 6
49 29.88 precipitation 0.1 30 < th dose independent rect. 6 14
51 29.88 precipitation 0.1 30 < th dose dependent rect. 6 14
53 29.89 wind 9.0 30 < th dose independent rect. 6 14
68 29.96 atmosphere 1015.0 30 < th dose dependent rect. 6 14
72 29.97 atmosphere 995.0 30 > th dose dependent rect. 20 10
74 29.98 temperature 10.0 1440 > th dose independent rect. 21 10
77 29.98 temperature 30.0 1440 < th dose independent rect. 21 10
81 29.98 humidity 50.0 1440 > th dose independent rect. 21 10
86 29.98 atmosphere 995.0 1440 > th dose independent rect. 21 10
87 29.98 radiation 40.0 1440 < th dose independent rect. 21 10
91 29.98 temperature 10.0 1440 > th dose independent rect. 7 14
99 29.99 temperature 10.0 30 > th dose independent rect. 20 10
100 29.99 temperature 30.0 30 < th dose independent rect. 20 10
101 29.99 humidity 50.0 30 > th dose independent rect. 20 10
104 29.99 atmosphere 995.0 30 > th dose independent rect. 20 10
105 29.99 radiation 20.0 30 < th dose independent rect. 20 10
108 29.99 temperature 10.0 30 > th dose independent rect. 6 14
110 29.99 atmosphere 1015.0 30 < th dose independent rect. 6 14
128 30.01 temperature 10.0 30 > th dose dependent rect. 6 14
129 30.02 wind 9.0 30 < th dose independent rect. 20 10
135 30.05 temperature 20.0 270 > th dose independent rect. 3 2
144 30.07 humidity 50.0 10 > th dose independent rect. 6 14
145 30.08 temperature 20.0 270 > th dose independent rect. 2 4
146 30.08 temperature 25.0 720 < th dose independent rect. 1 7
148 30.08 precipitation 0.1 30 < th dose independent rect. 20 10
150 30.08 precipitation 0.1 30 < th dose dependent rect. 20 10
152 30.10 temperature 25.0 270 > th dose independent rect. 4 4
173 30.15 temperature 20.0 720 > th dose dependent sin 11 NA
182 30.17 radiation 40.0 30 < th dose dependent rect. 6 14
183 30.17 atmosphere 1015.0 30 < th dose dependent rect. 6 22
189 30.19 atmosphere 995.0 30 > th dose independent rect. 6 14
207 30.22 humidity 50.0 30 > th dose dependent rect. 20 10
211 30.24 temperature 20.0 720 > th dose independent rect. 21 6
214 30.24 radiation 40.0 30 < th dose dependent rect. 20 10
219 30.25 radiation 20.0 10 < th dose independent rect. 6 14
222 30.25 atmosphere 995.0 90 > th dose dependent rect. 11 19
236 30.29 temperature 25.0 270 < th dose independent rect. 21 14
264 30.33 temperature 20.0 10 > th dose independent rect. 2 5
267 30.33 radiation 20.0 10 < th dose independent rect. 6 23
308 30.41 temperature 20.0 720 > th dose independent rect. 15 18
312 30.41 atmosphere 995.0 90 > th dose dependent rect. 9 21
317 30.42 atmosphere 995.0 270 > th dose dependent rect. 9 13
318 30.43 temperature 20.0 1440 < th dose independent rect. 22 4
322 30.43 atmosphere 995.0 43200 < th dose dependent rect. 12 15
337 30.44 wind 9.0 30 < th dose dependent rect. 20 10
341 30.45 temperature 25.0 90 < th dose independent sin 7 NA
343 30.45 temperature 25.0 90 > th dose independent rect. 18 17
344 30.45 temperature 20.0 270 > th dose dependent rect. 6 2
353 30.46 atmosphere 995.0 720 > th dose dependent rect. 9 6
357 30.47 temperature 25.0 90 > th dose independent sin 7 NA
366 30.47 radiation 30.0 10 < th dose dependent rect. 6 23
373 30.48 atmosphere 1005.0 270 > th dose dependent rect. 10 11
397 30.50 atmosphere 995.0 10 > th dose dependent rect. 12 18
398 30.51 temperature 20.0 1440 > th dose independent rect. 24 1
422 30.52 temperature 10.0 720 > th dose dependent rect. 15 18
423 30.52 atmosphere 995.0 43200 < th dose dependent rect. 11 19
426 30.53 temperature 20.0 720 > th dose independent sin 12 NA
459 30.54 atmosphere 995.0 43200 < th dose dependent sin 16 NA
464 30.54 atmosphere 995.0 43200 < th dose dependent rect. 13 12
476 30.55 temperature 20.0 1440 < th dose independent rect. 22 11
486 30.55 atmosphere 1015.0 30 < th dose dependent rect. 6 18
514 30.56 temperature 10.0 10 > th dose dependent rect. 6 23
571 30.59 atmosphere 995.0 43200 < th dose independent rect. 17 21
604 30.61 temperature 25.0 720 < th dose independent sin 8 NA
631 30.61 atmosphere 995.0 43200 > th dose independent rect. 17 21
640 30.61 atmosphere 1010.0 270 < th dose dependent rect. 6 18
682 30.63 radiation 30.0 30 < th dose dependent rect. 21 23
736 30.67 temperature 25.0 720 > th dose independent sin 8 NA
739 30.67 temperature 20.0 720 < th dose independent sin 11 NA
742 30.67 temperature 25.0 720 < th dose independent rect. 3 4
757 30.67 atmosphere 995.0 43200 > th dose independent rect. 21 18
787 30.68 temperature 20.0 720 < th dose independent rect. 18 13
923 30.72 atmosphere 995.0 43200 < th dose independent rect. 21 18
962 30.73 temperature 25.0 90 > th dose independent rect. 21 23
995 30.74 atmosphere 1005.0 720 > th dose dependent rect. 10 5