Os08g0393700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0393700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.02 | 0.502 | 6.22 | 1.4 | 0.593 | -0.795 | -1.06 | 0.828 | -0.402 | 14.6 | 21.2 | 1169 | -- | -- |
| 115.72 | 0.501 | 6.23 | 1.28 | 0.614 | -0.867 | -1.19 | -- | -0.409 | 14.5 | 21.4 | 2144 | -- | -- |
| 117.64 | 0.505 | 6.21 | 1.44 | 0.588 | -0.787 | -- | 1.07 | -0.396 | 14.4 | 21.3 | 1135 | -- | -- |
| 120.99 | 0.512 | 6.24 | 1.26 | 0.63 | -0.92 | -- | -- | -0.422 | 14.4 | 21.2 | 2123 | -- | -- |
| 137.03 | 0.545 | 6.2 | 1.47 | -- | -0.879 | -- | 1.16 | -0.382 | -- | 21.2 | 1086 | -- | -- |
| 137.33 | 0.549 | 6.29 | 0.859 | 0.673 | -- | -1.28 | -- | -0.679 | 14.4 | -- | -- | -- | -- |
| 143.2 | 0.56 | 6.29 | 0.824 | 0.667 | -- | -- | -- | -0.687 | 14.1 | -- | -- | -- | -- |
| 140.03 | 0.551 | 6.23 | 1.19 | -- | -0.996 | -- | -- | -0.415 | -- | 21.2 | 1087 | -- | -- |
| 151.25 | 0.573 | 6.28 | -- | 0.585 | -0.461 | -- | -- | -0.631 | 14.3 | 22.3 | 1038 | -- | -- |
| 169.86 | 0.609 | 6.3 | 0.796 | -- | -- | -- | -- | -0.703 | -- | -- | -- | -- | -- |
| 161.08 | 0.594 | 6.32 | -- | 0.652 | -- | -- | -- | -0.779 | 14.1 | -- | -- | -- | -- |
| 171.06 | 0.609 | 6.28 | -- | -- | -0.564 | -- | -- | -0.619 | -- | 22.4 | 1028 | -- | -- |
| 186.57 | 0.638 | 6.32 | -- | -- | -- | -- | -- | -0.791 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 7 | 113.88 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 8 | 113.88 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 14 |
| 10 | 113.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 16 |
| 13 | 113.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 14 | 113.95 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 2 |
| 15 | 114.00 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 19 | 114.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 26 | 114.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 27 | 114.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 30 | 114.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 36 | 114.27 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 42 | 114.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 46 | 114.39 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 4 |
| 58 | 114.53 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 63 | 114.58 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 69 | 114.62 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 72 | 114.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 74 | 114.65 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 76 | 114.66 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 88 | 114.69 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 104 | 114.75 | radiation | 30 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 117 | 114.78 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 135 | 114.85 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 141 | 114.86 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 142 | 114.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 143 | 114.87 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 147 | 114.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 300 | 115.34 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 326 | 115.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 327 | 115.40 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 9 |
| 344 | 115.44 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 23 |
| 364 | 115.49 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 368 | 115.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 5 |
| 385 | 115.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 19 |
| 388 | 115.54 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 395 | 115.55 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 17 |
| 400 | 115.56 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 416 | 115.59 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 501 | 115.79 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 520 | 115.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 538 | 115.88 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 20 |
| 571 | 115.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 12 |
| 631 | 116.12 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 647 | 116.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 648 | 116.15 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 753 | 116.34 | wind | 9 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 771 | 116.38 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 797 | 116.43 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 801 | 116.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 847 | 116.52 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 864 | 116.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 867 | 116.55 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 6 |
| 869 | 116.55 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 873 | 116.55 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 912 | 116.58 | temperature | 20 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 937 | 116.62 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 978 | 116.66 | temperature | 20 | 14400 | > th | dose dependent | rect. | 8 | 7 |