Os08g0392500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0392500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.86 | 0.445 | 7.46 | -1.13 | 0.342 | 0.607 | 0.669 | -0.399 | 0.374 | 22.1 | 21.8 | 1146 | -- | -- |
| 90.27 | 0.442 | 7.45 | -1.05 | 0.352 | 0.636 | 0.619 | -- | 0.399 | 22 | 21.7 | 1148 | -- | -- |
| 91.57 | 0.446 | 7.45 | -1.1 | 0.345 | 0.595 | -- | -0.229 | 0.385 | 22 | 21.9 | 1149 | -- | -- |
| 91.65 | 0.446 | 7.45 | -1.04 | 0.34 | 0.621 | -- | -- | 0.399 | 22 | 21.8 | 1145 | -- | -- |
| 97.27 | 0.459 | 7.44 | -1.01 | -- | 0.65 | -- | 0.0547 | 0.391 | -- | 21.9 | 874 | -- | -- |
| 103.52 | 0.477 | 7.4 | -0.774 | 0.405 | -- | 0.565 | -- | 0.591 | 22.4 | -- | -- | -- | -- |
| 104.81 | 0.479 | 7.4 | -0.797 | 0.401 | -- | -- | -- | 0.589 | 22.4 | -- | -- | -- | -- |
| 97.27 | 0.459 | 7.44 | -1.02 | -- | 0.645 | -- | -- | 0.386 | -- | 21.93 | 870 | -- | -- |
| 115.85 | 0.501 | 7.41 | -- | 0.335 | 0.353 | -- | -- | 0.571 | 21.9 | 22.3 | 978 | -- | -- |
| 114.67 | 0.5 | 7.39 | -0.791 | -- | -- | -- | -- | 0.591 | -- | -- | -- | -- | -- |
| 121.56 | 0.516 | 7.38 | -- | 0.397 | -- | -- | -- | 0.678 | 22.3 | -- | -- | -- | -- |
| 121.93 | 0.514 | 7.4 | -- | -- | 0.43 | -- | -- | 0.544 | -- | 22.3 | 858 | -- | -- |
| 131.15 | 0.535 | 7.37 | -- | -- | -- | -- | -- | 0.678 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 19 | 90.90 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 27 | 91.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 71 | 91.24 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 85 | 91.34 | radiation | 20 | 30 | > th | dose independent | rect. | 11 | 1 |
| 92 | 91.35 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 103 | 91.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 183 | 91.54 | wind | 3 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 248 | 91.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 249 | 91.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 264 | 91.68 | wind | 3 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 292 | 91.73 | temperature | 15 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 293 | 91.74 | temperature | 15 | 1440 | > th | dose dependent | sin | 14 | NA |
| 305 | 91.75 | radiation | 1 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 330 | 91.78 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 490 | 92.00 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 7 |
| 496 | 92.01 | humidity | 90 | 4320 | > th | dose dependent | rect. | 7 | 7 |
| 524 | 92.05 | humidity | 90 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 659 | 92.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 666 | 92.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 757 | 92.38 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 8 |
| 876 | 92.52 | humidity | 90 | 4320 | > th | dose dependent | rect. | 8 | 3 |
| 943 | 92.59 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 957 | 92.61 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 998 | 92.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |