Os08g0391300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0391300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 177.25 | 0.626 | 7.04 | -2.55 | 1.1 | -3.7 | 0.477 | -1.25 | 0.488 | 3.56 | 19.1 | 7906 | -- | -- |
| 178.05 | 0.621 | 7.07 | -2.53 | 1.12 | -3.31 | 0.605 | -- | 0.522 | 3.45 | 18.92 | 7923 | -- | -- |
| 176.48 | 0.619 | 7.02 | -2.5 | 1.12 | -3.96 | -- | -1.83 | 0.504 | 3.6 | 18.98 | 7858 | -- | -- |
| 178.71 | 0.623 | 7.08 | -2.53 | 1.13 | -3.33 | -- | -- | 0.515 | 3.57 | 19 | 7920 | -- | -- |
| 243.48 | 0.727 | 7.02 | -2.53 | -- | -4.06 | -- | -1.92 | 0.531 | -- | 19 | 8140 | -- | -- |
| 315.6 | 0.833 | 6.9 | -0.337 | 1.15 | -- | 0.489 | -- | 1.31 | 3.36 | -- | -- | -- | -- |
| 316.33 | 0.833 | 6.9 | -0.346 | 1.15 | -- | -- | -- | 1.31 | 3.42 | -- | -- | -- | -- |
| 246.34 | 0.731 | 7.09 | -2.63 | -- | -3.47 | -- | -- | 0.503 | -- | 18.91 | 8160 | -- | -- |
| 219.95 | 0.691 | 6.97 | -- | 1.3 | -1.43 | -- | -- | 0.992 | 3.97 | 21.6 | 489 | -- | -- |
| 390.74 | 0.924 | 6.9 | -0.297 | -- | -- | -- | -- | 1.34 | -- | -- | -- | -- | -- |
| 319.48 | 0.836 | 6.89 | -- | 1.14 | -- | -- | -- | 1.35 | 3.43 | -- | -- | -- | -- |
| 275.49 | 0.773 | 6.98 | -- | -- | -1.44 | -- | -- | 1.01 | -- | 22.2 | 1226 | -- | -- |
| 393.07 | 0.925 | 6.89 | -- | -- | -- | -- | -- | 1.37 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 2 | 179.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 5 | 179.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 14 | 16 |
| 6 | 179.76 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 15 | 180.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 31 | 180.30 | humidity | 70 | 43200 | < th | dose dependent | rect. | 2 | 8 |
| 80 | 181.61 | humidity | 60 | 43200 | < th | dose dependent | sin | 6 | NA |
| 87 | 181.81 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 19 |
| 203 | 183.53 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 208 | 183.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 217 | 183.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 225 | 183.82 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 236 | 183.89 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 240 | 183.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 282 | 184.37 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 291 | 184.48 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 309 | 184.62 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 349 | 184.96 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 352 | 184.98 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 12 |
| 355 | 184.99 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 404 | 185.31 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 431 | 185.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 464 | 185.69 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 480 | 185.78 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 493 | 185.85 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 505 | 185.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 527 | 186.01 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 565 | 186.13 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 566 | 186.14 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 569 | 186.16 | temperature | 25 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 570 | 186.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 575 | 186.19 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 639 | 186.44 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 686 | 186.62 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 707 | 186.71 | humidity | 60 | 43200 | < th | dose independent | sin | 8 | NA |
| 880 | 187.34 | temperature | 10 | 1440 | > th | dose dependent | sin | 13 | NA |
| 926 | 187.49 | temperature | 25 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 944 | 187.54 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 997 | 187.74 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 999 | 187.75 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 22 |
| 1000 | 187.75 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 23 |