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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0390700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 2-oxoglutarate-dependent oxygenase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0436) R2 : 0.415
β1 : 2.73 (0.169) R2dD : 0.466 R2D : -0.0578
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.34 (0.172) R2dE : 0.431 R2E : -0.379
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.49 (0.112) R2dN8 : 0.489 R2N8 : -0.229
σ : 0.759
deviance : 265.82
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 3.38
memory length : 24278
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
268.53 0.77 3.21 1.48 0.163 2.51 0.751 4.24 0.849 4.92 2.05 12926 -- --
281.86 0.782 3.08 2.19 0.43 2.38 -0.546 -- 1.08 16.7 4.233 12172 -- --
268.14 0.763 3.17 1.57 0.169 2.29 -- 3.31 0.907 5 2.875 12879 -- --
276.76 0.775 3.09 2.19 0.167 1.8 -- -- 1.04 5.19 3.912 14308 -- --
269.55 0.765 3.17 1.58 -- 2.31 -- 3.31 0.91 -- 2.888 12845 -- --
368.99 0.901 3.21 1.68 0.204 -- 0.172 -- 0.499 8.45 -- -- -- --
369.05 0.9 3.21 1.69 0.203 -- -- -- 0.499 8.87 -- -- -- --
265.82 0.759 2.99 2.73 -- 2.34 -- -- 1.49 -- 3.38 24278 -- --
363.19 0.888 3.14 -- 0.179 1.72 -- -- 0.83 5.05 9.997 10013 -- --
371.4 0.901 3.21 1.69 -- -- -- -- 0.501 -- -- -- -- --
444.25 0.986 3.25 -- 0.209 -- -- -- 0.311 8.26 -- -- -- --
364.84 0.89 3.14 -- -- 1.71 -- -- 0.836 -- 9.91 10004 -- --
446.67 0.986 3.26 -- -- -- -- -- 0.313 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 262.30 humidity 80.0 43200 > th dose independent rect. 16 1
2 262.65 humidity 80.0 43200 > th dose dependent rect. 8 13
7 262.81 humidity 80.0 43200 > th dose dependent rect. 15 4
10 262.90 humidity 80.0 43200 > th dose independent rect. 9 11
11 262.91 humidity 90.0 43200 < th dose independent rect. 20 1
12 262.96 humidity 90.0 43200 < th dose independent rect. 6 16
15 263.02 humidity 80.0 43200 > th dose dependent rect. 14 6
20 263.08 humidity 80.0 43200 > th dose independent rect. 13 5
21 263.08 humidity 90.0 43200 < th dose independent rect. 13 9
25 263.12 humidity 90.0 43200 < th dose independent rect. 11 11
32 263.21 humidity 80.0 43200 > th dose independent rect. 11 9
38 263.22 humidity 90.0 43200 > th dose independent rect. 20 1
42 263.25 humidity 70.0 43200 > th dose dependent rect. 17 1
43 263.27 humidity 70.0 43200 > th dose dependent rect. 10 9
63 263.39 humidity 80.0 43200 < th dose independent rect. 9 11
69 263.48 humidity 80.0 43200 > th dose dependent sin 22 NA
89 263.60 precipitation 0.1 43200 > th dose dependent rect. 13 1
109 263.76 humidity 90.0 43200 < th dose independent sin 22 NA
124 263.88 humidity 90.0 43200 > th dose independent rect. 6 16
174 264.18 humidity 80.0 43200 < th dose independent rect. 13 5
176 264.19 humidity 80.0 43200 > th dose dependent rect. 8 3
184 264.24 humidity 80.0 43200 > th dose dependent rect. 7 8
207 264.40 humidity 90.0 43200 < th dose independent rect. 6 10
263 264.70 humidity 90.0 43200 > th dose independent rect. 6 4
267 264.72 humidity 90.0 43200 < th dose independent rect. 6 4
277 264.80 precipitation 0.1 43200 < th dose independent rect. 13 1
280 264.80 precipitation 0.1 43200 < th dose dependent rect. 13 1
289 264.85 humidity 90.0 43200 < th dose independent rect. 7 1
329 264.99 precipitation 0.1 43200 < th dose independent rect. 13 11
332 264.99 precipitation 0.1 43200 < th dose dependent rect. 13 11
336 265.00 precipitation 0.1 43200 > th dose independent rect. 13 11
347 265.05 precipitation 0.1 43200 > th dose independent rect. 13 1
362 265.13 humidity 90.0 43200 > th dose independent sin 21 NA
372 265.15 humidity 70.0 43200 > th dose dependent rect. 13 1
386 265.21 humidity 80.0 43200 < th dose independent rect. 16 1
399 265.26 humidity 80.0 43200 < th dose independent rect. 9 6
436 265.39 precipitation 0.1 43200 > th dose dependent rect. 13 4
473 265.54 humidity 80.0 43200 < th dose independent rect. 13 1
548 265.79 temperature 10.0 43200 > th dose dependent rect. 17 1
561 265.84 precipitation 0.1 43200 > th dose independent rect. 15 12
573 265.86 precipitation 0.1 43200 < th dose independent rect. 15 12
574 265.86 precipitation 0.1 43200 < th dose dependent rect. 15 12
585 265.89 precipitation 0.1 43200 > th dose independent rect. 15 10
588 265.89 temperature 30.0 43200 < th dose dependent rect. 17 1
609 265.96 precipitation 0.1 43200 < th dose independent rect. 15 9
613 265.96 precipitation 0.1 43200 < th dose dependent rect. 15 9
617 265.97 humidity 80.0 43200 < th dose independent rect. 10 1
619 265.97 radiation 1.0 14400 > th dose independent rect. 4 13
644 266.00 radiation 1.0 14400 < th dose independent rect. 4 13
668 266.05 radiation 1.0 14400 < th dose independent rect. 21 20
739 266.22 radiation 10.0 14400 < th dose independent rect. 11 20
753 266.25 humidity 90.0 14400 > th dose independent rect. 1 1
763 266.27 humidity 90.0 43200 < th dose independent no NA NA
772 266.28 humidity 90.0 43200 < th dose independent rect. 11 23
779 266.29 humidity 90.0 43200 < th dose independent rect. 15 23
804 266.32 humidity 90.0 43200 < th dose independent rect. 17 23
811 266.33 humidity 90.0 43200 < th dose independent rect. 13 23
813 266.34 humidity 90.0 43200 < th dose independent rect. 19 23
835 266.40 humidity 90.0 43200 > th dose dependent rect. 20 1
892 266.51 humidity 80.0 43200 > th dose independent rect. 9 3
909 266.54 precipitation 0.1 43200 > th dose independent sin 17 NA
910 266.54 precipitation 0.1 43200 < th dose independent sin 17 NA
915 266.54 precipitation 0.1 43200 < th dose dependent sin 17 NA
922 266.55 radiation 10.0 14400 < th dose independent rect. 13 18
967 266.65 radiation 1.0 14400 < th dose independent rect. 4 4
983 266.69 radiation 1.0 14400 > th dose independent rect. 4 4
1000 266.70 precipitation 0.1 43200 < th dose independent rect. 13 8