Os08g0390500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os08g0390500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.28 | 0.477 | 3.42 | -0.645 | 0.136 | 5 | -0.392 | -15.7 | 0.0849 | 13.2 | 0.3165 | 1358 | -- | -- |
| 113.29 | 0.496 | 3.26 | -0.0182 | 0.0824 | 1.47 | -0.532 | -- | 0.0524 | 13.9 | 1.503 | 60 | -- | -- |
| 103.53 | 0.474 | 3.43 | -0.672 | 0.153 | 5.04 | -- | -16 | 0.0733 | 11.5 | 0.3723 | 1352 | -- | -- |
| 113.54 | 0.496 | 3.26 | -0.048 | 0.136 | 1.27 | -- | -- | 0.0244 | 11.5 | 1.5 | 59 | -- | -- |
| 104.74 | 0.477 | 3.45 | -0.831 | -- | 5.73 | -- | -18.5 | 0.0684 | -- | 0.3975 | 1353 | -- | -- |
| 114.76 | 0.502 | 3.26 | -0.0253 | 0.113 | -- | -0.432 | -- | 0.0232 | 13.7 | -- | -- | -- | -- |
| 115.29 | 0.503 | 3.26 | -0.04 | 0.125 | -- | -- | -- | 0.0197 | 11.8 | -- | -- | -- | -- |
| 114.59 | 0.499 | 3.27 | -0.0573 | -- | 1.19 | -- | -- | 0.0215 | -- | 1.5 | 61 | -- | -- |
| 113.61 | 0.496 | 3.26 | -- | 0.13 | 1.21 | -- | -- | 0.0288 | 11.3 | 1.5 | 59 | -- | -- |
| 116.28 | 0.504 | 3.27 | -0.0437 | -- | -- | -- | -- | 0.0182 | -- | -- | -- | -- | -- |
| 115.33 | 0.502 | 3.26 | -- | 0.126 | -- | -- | -- | 0.0242 | 11.8 | -- | -- | -- | -- |
| 114.68 | 0.499 | 3.26 | -- | -- | 1.18 | -- | -- | 0.0278 | -- | 1.5 | 143 | -- | -- |
| 116.33 | 0.503 | 3.27 | -- | -- | -- | -- | -- | 0.023 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.38 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 100.72 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 4 | 101.31 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 5 | 101.31 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 6 | 12 |
| 6 | 101.35 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 7 | 101.36 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 6 | 12 |
| 8 | 101.38 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 12 | 101.42 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 23 | 101.82 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 24 | 101.82 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 36 | 102.05 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 37 | 102.05 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 40 | 102.15 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 60 | 102.43 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 20 | 22 |
| 85 | 102.69 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 23 | 19 |
| 92 | 102.72 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 14 | 4 |
| 93 | 102.72 | precipitation | 0.1 | 1440 | > th | dose dependent | sin | 22 | NA |
| 94 | 102.72 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 14 | 4 |
| 107 | 102.81 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 6 | 21 |
| 142 | 103.00 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 168 | 103.17 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 199 | 103.40 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 19 | 11 |
| 225 | 103.51 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 19 | 6 |
| 237 | 103.58 | temperature | 10.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 251 | 103.64 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 253 | 103.64 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 257 | 103.65 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 6 | 20 |
| 264 | 103.67 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 270 | 103.68 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 6 | 20 |
| 271 | 103.68 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 6 | 20 |
| 274 | 103.69 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 3 |
| 283 | 103.73 | temperature | 30.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 315 | 103.84 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 321 | 103.84 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 334 | 103.88 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 343 | 103.90 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 353 | 103.94 | wind | 9.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 371 | 103.99 | wind | 9.0 | 14400 | > th | dose independent | rect. | 19 | 15 |
| 373 | 103.99 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 22 | 8 |
| 377 | 104.00 | wind | 9.0 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 379 | 104.00 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 393 | 104.03 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 395 | 104.04 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 398 | 104.05 | precipitation | 0.1 | 1440 | < th | dose independent | sin | 21 | NA |
| 403 | 104.05 | precipitation | 0.1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 406 | 104.06 | wind | 9.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 414 | 104.08 | precipitation | 0.1 | 1440 | > th | dose independent | sin | 21 | NA |
| 430 | 104.11 | wind | 9.0 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 482 | 104.25 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 486 | 104.27 | wind | 9.0 | 14400 | < th | dose independent | rect. | 19 | 15 |
| 493 | 104.28 | temperature | 25.0 | 720 | < th | dose dependent | sin | 10 | NA |
| 519 | 104.33 | wind | 9.0 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 523 | 104.34 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 14 | 13 |
| 528 | 104.34 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 14 | 13 |
| 529 | 104.35 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 536 | 104.35 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 562 | 104.41 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 574 | 104.44 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 583 | 104.45 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 18 |
| 585 | 104.45 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 18 |
| 592 | 104.46 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 19 |
| 594 | 104.47 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 605 | 104.48 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 610 | 104.49 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 614 | 104.49 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 617 | 104.49 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 676 | 104.57 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 678 | 104.57 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 14 | 21 |
| 690 | 104.59 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 20 | 20 |
| 702 | 104.61 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 717 | 104.63 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 719 | 104.63 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 18 |
| 728 | 104.64 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 14 | 13 |
| 775 | 104.69 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 24 | 22 |
| 781 | 104.70 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 790 | 104.71 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 20 | 22 |
| 798 | 104.72 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 14 | 13 |
| 811 | 104.74 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 20 | 22 |
| 812 | 104.74 | temperature | 10.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 818 | 104.74 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 15 |
| 824 | 104.74 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 20 | 22 |
| 828 | 104.75 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 835 | 104.75 | precipitation | 0.1 | 1440 | > th | dose dependent | no | NA | NA |
| 893 | 104.80 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 901 | 104.81 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 902 | 104.81 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 953 | 104.86 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 972 | 104.87 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |