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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0390200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 2-oxoglutarate-dependent oxygenase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.14 (0.101) R2 : 0.645
β1 : -8.52 (0.608) R2dD : 0.731 R2D : 0.0457
β2 : 1.99 (0.191) R2dC : 0.0898 R2C : -0.0216
β3 : 6.03 (0.3) R2dE : 0.573 R2E : 0.0642
β4 : -3.13 (0.737) R2dD*C : 0.0149 R2D*C : 0.0034
β5 : -8.45 (1.93) R2dD*E : 0.072 R2D*E : -0.332
γ1 : -1.12 (0.221) R2dN8 : 0.0479 R2N8 : -0.0918
σ : 1.46
deviance : 964.42
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_____
C
peak time of C : 13.4
E
wheather : temperature
threshold : 23.65
memory length : 1284
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 13.4
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
964.42 1.46 7.14 -8.52 1.99 6.03 -3.13 -8.45 -1.12 13.4 23.65 1284 13.4 --
1004.14 1.48 6.88 -6.14 2.14 5.45 -2.79 -- -0.522 13.5 23.25 1245 12.8 --
1002.11 1.47 7.1 -8.22 2.03 5.97 -- -7.01 -1 13.2 23.84 1275 13.5 --
1027.14 1.49 6.87 -6.27 2.2 5.49 -- -- -0.553 13.4 23.34 1233 12.8 --
1136.67 1.57 7.12 -8.19 -- 5.64 -- -6.42 -1.01 -- 23.81 1512 13.8 --
2005.68 2.1 6.68 -4.41 0.996 -- -3.41 -- 0.321 13 -- -- -- --
2052.15 2.12 6.69 -4.54 1.01 -- -- -- 0.299 12.2 -- -- -- --
1166.6 1.59 6.9 -6.39 -- 5.15 -- -- -0.589 -- 23.35 1523 14.4 --
1975.45 2.07 6.6 -- 1.87 4.01 -- -- 0.643 13 25.38 1184 11.9 --
2116.92 2.15 6.71 -4.57 -- -- -- -- 0.284 -- -- -- -- --
2594.49 2.38 6.57 -- 1.08 -- -- -- 0.804 12.4 -- -- -- --
2087.67 2.13 6.51 -- -- 3.55 -- -- 1.04 -- 26.43 1523 6.69 --
2667.64 2.41 6.59 -- -- -- -- -- 0.791 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 993.14 temperature 25 1440 > th dose dependent rect. 11 8
2 993.61 temperature 25 1440 > th dose dependent sin 20 NA
7 994.89 temperature 25 1440 > th dose dependent rect. 11 13
12 995.94 temperature 25 1440 > th dose dependent rect. 11 22
15 996.00 temperature 25 1440 > th dose dependent rect. 16 1
29 998.01 temperature 25 1440 > th dose dependent rect. 7 12
42 998.34 temperature 25 1440 > th dose dependent rect. 7 17
56 998.71 temperature 25 1440 > th dose dependent rect. 15 4
108 1000.90 temperature 25 1440 > th dose dependent rect. 22 21
162 1002.57 temperature 25 1440 > th dose dependent no NA NA
195 1005.80 temperature 25 1440 > th dose dependent rect. 15 23
431 1083.67 wind 5 43200 > th dose independent rect. 20 1
461 1088.31 wind 5 43200 < th dose independent rect. 20 1
468 1089.71 temperature 30 1440 < th dose independent rect. 10 6
506 1094.90 temperature 30 1440 < th dose independent rect. 10 21
508 1095.11 temperature 30 1440 < th dose independent rect. 10 14
509 1095.20 temperature 30 1440 < th dose independent rect. 10 19
519 1095.43 temperature 30 1440 < th dose independent rect. 10 17
544 1096.52 temperature 30 1440 < th dose independent rect. 18 22
569 1098.22 temperature 30 1440 < th dose independent sin 20 NA
593 1100.66 temperature 30 1440 < th dose independent rect. 2 14
596 1100.79 temperature 30 1440 < th dose independent rect. 14 22
602 1100.96 temperature 30 1440 < th dose independent rect. 4 12
612 1101.20 temperature 30 1440 < th dose independent rect. 6 10
635 1102.92 temperature 10 1440 > th dose dependent rect. 16 1
670 1104.67 temperature 30 1440 < th dose independent rect. 2 22
677 1104.87 temperature 30 1440 < th dose independent rect. 4 20
693 1105.08 temperature 30 1440 < th dose independent rect. 6 18
704 1105.16 temperature 30 1440 < th dose independent rect. 4 23
705 1105.16 temperature 30 1440 < th dose independent rect. 6 23
706 1105.17 temperature 30 1440 < th dose independent no NA NA
710 1105.20 temperature 30 1440 < th dose independent rect. 21 23
714 1105.22 temperature 30 1440 < th dose independent rect. 23 23
736 1105.37 temperature 30 1440 < th dose independent rect. 6 21
762 1105.60 temperature 25 4320 < th dose independent rect. 7 1
768 1105.72 temperature 30 1440 < th dose independent rect. 13 18
773 1105.95 temperature 30 1440 < th dose independent rect. 13 11
776 1106.10 temperature 30 1440 < th dose independent rect. 13 16
785 1106.40 temperature 30 1440 < th dose independent rect. 13 14
794 1106.87 wind 5 43200 > th dose independent rect. 8 7
839 1109.20 temperature 30 1440 > th dose independent rect. 10 6
840 1109.24 temperature 30 1440 > th dose independent rect. 11 8
897 1111.03 temperature 30 1440 > th dose independent rect. 14 22
910 1111.74 temperature 30 1440 > th dose independent sin 19 NA
912 1111.75 wind 5 43200 > th dose dependent rect. 9 6
936 1112.36 wind 5 43200 > th dose independent rect. 5 10
969 1113.95 temperature 30 1440 > th dose independent rect. 18 22
975 1114.30 wind 5 43200 > th dose independent rect. 3 13
989 1114.90 temperature 30 1440 > th dose independent rect. 14 5