Os08g0389800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0389800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.69 | 0.605 | 7.64 | 2.19 | 1.62 | -1.77 | -1.87 | 1.36 | 0.69 | 18.4 | 19.97 | 702 | 18 | 3.05 |
| 168.03 | 0.604 | 7.64 | 2.11 | 1.58 | -1.71 | -2.07 | -- | 0.679 | 18.3 | 19.29 | 702 | 18 | 3.07 |
| 173.86 | 0.614 | 7.65 | 2.21 | 1.63 | -1.75 | -- | 1.44 | 0.694 | 18.5 | 19.48 | 705 | 17.9 | 3.09 |
| 176.42 | 0.619 | 7.67 | 2.05 | 1.61 | -1.71 | -- | -- | 0.621 | 18.6 | 18.88 | 704 | 17.9 | 3.13 |
| 227.97 | 0.703 | 7.57 | 2.46 | -- | -2.45 | -- | 1.36 | 0.862 | -- | 16.49 | 842 | 18.2 | 5.08 |
| 238.38 | 0.724 | 7.7 | 1.74 | 2.33 | -- | -1.34 | -- | 0.464 | 16.7 | -- | -- | -- | -- |
| 243.08 | 0.73 | 7.7 | 1.74 | 2.32 | -- | -- | -- | 0.458 | 16.6 | -- | -- | -- | -- |
| 199.12 | 0.657 | 7.63 | 2.17 | -- | -3.22 | -- | -- | 0.66 | -- | 4.536 | 805 | 16.7 | 11.1 |
| 277.32 | 0.776 | 7.7 | -- | 1.79 | -1.27 | -- | -- | 0.388 | 17.9 | 20.61 | 663 | 18.6 | 1.79 |
| 528.49 | 1.07 | 7.68 | 1.65 | -- | -- | -- | -- | 0.397 | -- | -- | -- | -- | -- |
| 322.55 | 0.84 | 7.74 | -- | 2.29 | -- | -- | -- | 0.264 | 16.7 | -- | -- | -- | -- |
| 297.58 | 0.803 | 7.69 | -- | -- | -2.78 | -- | -- | 0.366 | -- | -1.612 | 634 | 18.1 | 10.7 |
| 600.13 | 1.14 | 7.72 | -- | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 167.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 2 | 167.33 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 34 | 174.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 5 |
| 48 | 176.08 | humidity | 70 | 4320 | < th | dose dependent | rect. | 19 | 2 |
| 67 | 176.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 77 | 178.22 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 91 | 178.29 | humidity | 70 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 134 | 181.71 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 8 |
| 135 | 181.80 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 137 | 181.83 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 140 | 181.95 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 156 | 182.64 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 1 |
| 169 | 182.90 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 3 |
| 219 | 184.20 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 242 | 184.70 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 6 |
| 259 | 185.74 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 277 | 186.21 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 302 | 186.81 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 313 | 187.37 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 7 |
| 317 | 187.52 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 322 | 187.52 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 5 |
| 338 | 187.66 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 341 | 187.75 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 349 | 187.89 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 367 | 188.38 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 377 | 188.62 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 383 | 188.78 | humidity | 90 | 90 | > th | dose independent | rect. | 3 | 2 |
| 412 | 188.97 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 439 | 189.54 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 445 | 189.71 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 453 | 190.04 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 468 | 190.12 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 469 | 190.18 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 479 | 190.40 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 564 | 191.12 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 565 | 191.14 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 576 | 191.27 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 12 |
| 583 | 191.40 | radiation | 20 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 595 | 191.60 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 19 |
| 610 | 191.70 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 633 | 191.90 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 670 | 192.54 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 688 | 192.63 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 3 |
| 698 | 192.74 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 22 |
| 719 | 193.16 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 720 | 193.16 | temperature | 20 | 30 | > th | dose independent | rect. | 2 | 21 |
| 722 | 193.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 727 | 193.32 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 736 | 193.40 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 773 | 193.53 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 21 |
| 775 | 193.54 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 1 |
| 784 | 193.58 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 2 |
| 789 | 193.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 13 |
| 796 | 193.67 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 816 | 193.72 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 837 | 193.77 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 838 | 193.79 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 17 |
| 852 | 193.82 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 871 | 193.96 | temperature | 20 | 30 | > th | dose independent | rect. | 24 | 23 |
| 875 | 194.02 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 17 |
| 877 | 194.03 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 879 | 194.04 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 880 | 194.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 892 | 194.12 | wind | 5 | 43200 | < th | dose independent | sin | 12 | NA |
| 906 | 194.28 | temperature | 30 | 1440 | < th | dose independent | sin | 11 | NA |
| 911 | 194.32 | wind | 5 | 43200 | > th | dose independent | sin | 12 | NA |
| 936 | 194.53 | temperature | 30 | 1440 | > th | dose independent | sin | 11 | NA |
| 984 | 194.79 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |