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Os08g0389500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.96 (0.0357) R2 : 0.584
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.03 (0.142) R2dE : 0.0523 R2E : -0.231
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.96 (0.0773) R2dN8 : 0.815 R2N8 : 0.532
σ : 0.664
deviance : 203.25
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 10.16
memory length : 3391
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.38 0.648 5.93 0.201 0.51 -1.03 -0.506 0.479 2 5.88 10.67 2906 -- --
190.6 0.643 5.94 0.0809 0.51 -1.03 -0.483 -- 1.97 5.87 12.62 2907 -- --
190.92 0.644 5.93 0.184 0.508 -1.03 -- 0.419 2 6.15 10.06 2922 -- --
191.08 0.644 5.94 0.0795 0.509 -1.03 -- -- 1.97 6.15 11.87 2929 -- --
202.81 0.663 5.94 0.215 -- -1.08 -- 0.45 2 -- 6.841 3403 -- --
212.01 0.683 5.99 -0.345 0.474 -- -0.357 -- 1.75 6.36 -- -- -- --
212.27 0.682 5.99 -0.348 0.473 -- -- -- 1.76 6.6 -- -- -- --
202.98 0.664 5.95 0.115 -- -1.09 -- -- 1.98 -- 1.798 3417 -- --
191.21 0.644 5.95 -- 0.508 -0.995 -- -- 1.95 6.15 11.25 2920 -- --
223.94 0.699 6 -0.337 -- -- -- -- 1.77 -- -- -- -- --
215.47 0.687 5.98 -- 0.469 -- -- -- 1.79 6.65 -- -- -- --
203.25 0.664 5.96 -- -- -1.03 -- -- 1.96 -- 10.16 3391 -- --
226.93 0.703 5.99 -- -- -- -- -- 1.8 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 182.01 atmosphere 995.0 43200 < th dose dependent rect. 15 1
2 182.32 atmosphere 995.0 43200 < th dose independent rect. 14 1
3 182.36 wind 9.0 43200 > th dose dependent rect. 18 12
7 182.58 atmosphere 995.0 43200 > th dose independent rect. 13 3
9 182.65 atmosphere 995.0 43200 > th dose independent rect. 14 1
22 182.84 atmosphere 995.0 43200 > th dose independent rect. 6 11
43 182.98 atmosphere 995.0 43200 > th dose independent rect. 8 13
117 183.27 atmosphere 995.0 43200 > th dose independent sin 23 NA
126 183.37 atmosphere 995.0 43200 < th dose independent sin 23 NA
149 183.59 radiation 1.0 43200 < th dose dependent rect. 21 4
157 183.73 radiation 1.0 4320 > th dose dependent rect. 18 11
178 184.11 wind 9.0 43200 > th dose independent rect. 18 13
183 184.19 radiation 1.0 4320 > th dose dependent rect. 18 1
192 184.19 wind 9.0 43200 > th dose dependent rect. 20 10
200 184.32 radiation 1.0 43200 < th dose dependent rect. 19 6
216 184.45 radiation 1.0 43200 < th dose dependent rect. 21 6
223 184.52 wind 9.0 43200 > th dose dependent rect. 18 6
240 184.82 wind 9.0 43200 < th dose independent rect. 18 13
244 184.88 radiation 1.0 43200 < th dose dependent rect. 19 8
247 184.95 wind 9.0 43200 > th dose dependent rect. 20 4
253 185.03 radiation 10.0 4320 < th dose independent rect. 16 15
276 185.32 radiation 10.0 4320 > th dose dependent rect. 16 15
277 185.35 wind 7.0 43200 < th dose independent rect. 6 1
283 185.41 wind 7.0 43200 > th dose independent rect. 6 1
294 185.62 wind 9.0 43200 > th dose dependent rect. 20 1
306 185.86 wind 9.0 43200 > th dose independent rect. 20 1
307 185.86 wind 9.0 43200 > th dose independent rect. 18 6
321 186.06 wind 9.0 43200 > th dose independent rect. 20 11
322 186.06 wind 1.0 43200 < th dose dependent rect. 20 1
330 186.18 radiation 30.0 4320 < th dose independent rect. 15 17
333 186.22 radiation 40.0 4320 < th dose dependent rect. 18 6
339 186.30 wind 9.0 43200 < th dose independent rect. 20 11
349 186.39 radiation 10.0 4320 < th dose independent rect. 16 7
352 186.40 wind 9.0 43200 < th dose independent rect. 20 1
353 186.40 radiation 10.0 4320 < th dose independent rect. 16 5
354 186.41 radiation 10.0 4320 < th dose independent rect. 16 3
359 186.42 radiation 40.0 4320 < th dose dependent rect. 18 3
363 186.48 radiation 10.0 4320 < th dose independent rect. 16 10
373 186.59 radiation 1.0 43200 < th dose dependent rect. 24 3
380 186.68 radiation 1.0 43200 < th dose dependent rect. 24 1
382 186.72 wind 9.0 43200 > th dose dependent sin 13 NA
401 186.79 wind 9.0 43200 > th dose independent rect. 20 5
410 186.86 atmosphere 1005.0 90 > th dose dependent rect. 24 11
413 186.90 wind 9.0 43200 < th dose independent rect. 18 6
422 187.00 atmosphere 1000.0 43200 < th dose dependent rect. 11 1
437 187.20 radiation 40.0 4320 < th dose dependent rect. 18 1
469 187.62 radiation 10.0 4320 < th dose dependent rect. 18 11
470 187.63 wind 5.0 43200 > th dose dependent rect. 6 1
471 187.64 wind 9.0 43200 < th dose independent rect. 20 5
503 187.91 wind 9.0 43200 > th dose independent rect. 18 3
504 187.94 wind 9.0 43200 > th dose independent sin 12 NA
514 188.01 wind 9.0 43200 < th dose independent rect. 18 3
525 188.05 wind 9.0 14400 > th dose dependent rect. 18 17
532 188.11 precipitation 0.1 43200 > th dose dependent rect. 20 2
544 188.18 radiation 30.0 4320 > th dose dependent rect. 15 17
554 188.30 temperature 25.0 1440 > th dose independent rect. 7 1
567 188.46 radiation 10.0 4320 > th dose dependent rect. 16 2
590 188.50 temperature 10.0 720 > th dose dependent rect. 7 7
601 188.60 wind 9.0 43200 < th dose independent sin 11 NA
617 188.76 temperature 25.0 1440 < th dose independent rect. 7 1
622 188.82 radiation 40.0 43200 < th dose dependent rect. 18 3
623 188.82 radiation 40.0 43200 < th dose dependent rect. 18 6
635 188.88 temperature 20.0 720 > th dose dependent rect. 7 6
644 188.94 radiation 40.0 43200 < th dose dependent rect. 18 1
668 189.05 radiation 10.0 4320 < th dose dependent rect. 18 8
694 189.15 radiation 40.0 43200 < th dose dependent rect. 18 10
702 189.19 atmosphere 995.0 43200 > th dose independent rect. 17 5
703 189.19 wind 1.0 1440 < th dose dependent rect. 4 5
718 189.26 atmosphere 1005.0 14400 < th dose independent rect. 22 1
723 189.28 atmosphere 995.0 43200 < th dose dependent rect. 17 5
734 189.33 atmosphere 995.0 43200 < th dose independent rect. 17 5
750 189.39 radiation 30.0 4320 < th dose independent rect. 7 1
757 189.44 atmosphere 995.0 43200 < th dose dependent sin 21 NA
769 189.50 radiation 30.0 4320 < th dose independent rect. 3 5
789 189.60 temperature 10.0 4320 > th dose dependent rect. 17 1
793 189.61 radiation 30.0 4320 < th dose independent rect. 1 7
795 189.61 atmosphere 1000.0 43200 < th dose dependent rect. 4 1
808 189.65 wind 5.0 43200 < th dose independent rect. 15 17
818 189.67 wind 5.0 43200 < th dose independent rect. 14 19
853 189.75 wind 5.0 43200 > th dose independent rect. 15 17
864 189.77 temperature 30.0 4320 < th dose dependent rect. 17 1
874 189.81 wind 5.0 43200 > th dose independent rect. 14 19
913 189.96 atmosphere 995.0 43200 < th dose independent rect. 18 1
916 189.96 radiation 30.0 4320 < th dose independent rect. 15 8
919 189.96 atmosphere 995.0 43200 < th dose dependent rect. 18 1
931 189.99 humidity 60.0 14400 > th dose independent rect. 18 1
940 190.01 radiation 40.0 4320 < th dose dependent rect. 16 1
944 190.03 atmosphere 995.0 43200 > th dose independent rect. 18 2
971 190.09 radiation 30.0 4320 < th dose independent rect. 22 10
975 190.10 humidity 90.0 4320 < th dose independent rect. 17 1
977 190.10 radiation 30.0 4320 < th dose independent rect. 20 12
991 190.13 radiation 10.0 4320 > th dose independent rect. 16 15